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SCNpilot_cont_500_bf_scaffold_487

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_487_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

646..1221
DNA (576bp) protein (192aa)
Tetratricopeptide domain protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYF6_VARPS
hypothetical protein
Tetratricopeptide domain protein {ECO:0000313|EMBL:ACS18915.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1400..1708
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYF5_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS18914.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1735..3012)
DNA (1278bp) protein (426aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYF4_VARPS rbh
hypothetical protein rbh
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:ACS18913.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3047..3898)
DNA (852bp) protein (284aa)
RNA polymerase sigma factor n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYF3_VARPS rbh
FliA/WhiG subfamily RNA polymerase sigma-28 subunit; K02405 RNA polymerase sigma factor for flagellar operon FliA rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3911..4741)
DNA (831bp) protein (277aa)
Flagellar biosynthetic protein FliP n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYF2_VARPS rbh
flagellar biosynthetic protein FliP; K02419 flagellar biosynthetic protein FliP rbh
Flagellar biosynthetic protein FliP {ECO:0000313|EMBL:ACS18911.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4753..5094)
DNA (342bp) protein (114aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYF1_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS18910.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5290..5787)
DNA (498bp) protein (166aa)
Surface presentation of antigens (SPOA) protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYF0_VARPS
surface presentation of antigens (SPOA) protein
Surface presentation of antigens (SPOA) protein {ECO:0000313|EMBL:ACS18909.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5825..6763)
DNA (939bp) protein (313aa)
Surface presentation of antigens (SPOA) protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYE9_VARPS
surface presentation of antigens (SPOA) protein
Surface presentation of antigens (SPOA) protein {ECO:0000313|EMBL:ACS18908.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6760..7968)
DNA (1209bp) protein (403aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYE8_VARPS rbh
hypothetical protein; K02390 flagellar hook protein FlgE rbh
Uncharacterized protein {ECO:0000313|EMBL:ACS18907.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8024..8425)
DNA (402bp) protein (134aa)
Flagellar hook capping protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYE7_VARPS
flagellar hook capping protein; K02389 flagellar basal-body rod modification protein FlgD
Flagellar hook capping protein {ECO:0000313|EMBL:ACS18906.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8425..9297)
DNA (873bp) protein (291aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYE6_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS18905.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9291..9806)
DNA (516bp) protein (172aa)
Coiled-coil domain containing 88-like protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYE5_VARPS
hypothetical protein
Coiled-coil domain containing 88-like protein {ECO:0000313|EMBL:ACS18904.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9803..11194)
DNA (1392bp) protein (464aa)
FliI/YscN family ATPase (EC:3.6.3.14); K02412 flagellum-specific ATP synthase [EC:3.6.3.14] rbh
ATPase, FliI/YscN family {ECO:0000313|EMBL:ACS18903.1}; EC=3.6.3.14 {ECO:0000313|EMBL:ACS18903.1};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
ATPase, FliI/YscN family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYE4_VARPS rbh
SCNpilot_cont_500_bf_scaffold_487_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11196..12038)
DNA (843bp) protein (281aa)
Flagellar assembly protein FliH n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYE3_VARPS
flagellar assembly protein FliH; K02411 flagellar assembly protein FliH
Flagellar assembly protein FliH {ECO:0000313|EMBL:ACS18902.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12035..12655)
DNA (621bp) protein (207aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYE2_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS18901.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12652..14166)
DNA (1515bp) protein (505aa)
Flagellar M-ring protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYE1_VARPS rbh
flagellar M-ring protein FliF; K02409 flagellar M-ring protein FliF rbh
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14163..14528)
DNA (366bp) protein (122aa)
Flagellar hook-basal body complex protein FliE n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYE0_VARPS
flagellar hook-basal body complex protein FliE; K02408 flagellar hook-basal body complex protein FliE
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14525..14974)
DNA (450bp) protein (150aa)
Flagellar basal-body rod protein FlgC n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CXP2_VARPS
flagellar basal-body rod protein FlgC; K02388 flagellar basal-body rod protein FlgC
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14976..15359)
DNA (384bp) protein (128aa)
Flagellar basal body protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CXP1_VARPS
flagellar basal body protein; K02387 flagellar basal-body rod protein FlgB
Flagellar basal body rod protein FlgB {ECO:0000256|PIRNR:PIRNR002889}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15406..16542)
DNA (1137bp) protein (379aa)
Flagellar P-ring protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CXP0_VARPS rbh
flgI; flagellar basal body P-ring protein; K02394 flagellar P-ring protein precursor FlgI rbh
Flagellar P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Basal body P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16551..17153)
DNA (603bp) protein (201aa)
Flagellar L-ring protein n=1 Tax=Variovorax sp. CF313 RepID=J3CIC4_9BURK rbh
Flagellar L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Basal body L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
flagellar L-ring protein; K02393 flagellar L-ring protein precursor FlgH
SCNpilot_cont_500_bf_scaffold_487_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17150..18229)
DNA (1080bp) protein (360aa)
Flagella basal body P-ring formation protein FlgA n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CXN8_VARPS rbh
flagella basal body P-ring formation protein FlgA; K02386 flagella basal body P-ring formation protein FlgA rbh
Flagella basal body P-ring formation protein FlgA {ECO:0000313|EMBL:ACS18894.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18213..19001)
DNA (789bp) protein (263aa)
Flagellar basal-body rod protein FlgG n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CXN7_VARPS rbh
flagellar basal-body rod protein FlgG rbh
Flagellar basal-body rod protein FlgG {ECO:0000313|EMBL:ACS18893.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19043..19828)
DNA (786bp) protein (262aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CXN6_VARPS rbh
hypothetical protein; K02392 flagellar basal-body rod protein FlgG rbh
Uncharacterized protein {ECO:0000313|EMBL:ACS18892.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19848..21959)
DNA (2112bp) protein (704aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CXN5_VARPS rbh
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:ACS18891.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
flagellar biosynthesis protein FlhA; K02400 flagellar biosynthesis protein FlhA rbh
SCNpilot_cont_500_bf_scaffold_487_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21956..23050)
DNA (1095bp) protein (365aa)
Type III secretion exporter n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CXN4_VARPS rbh
type III secretion exporter; K02401 flagellar biosynthetic protein FlhB rbh
Type III secretion exporter {ECO:0000313|EMBL:ACS18890.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_500_bf_scaffold_487_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23050..23853)
DNA (804bp) protein (268aa)
Flagellar biosynthesis pathway, component FliR n=1 Tax=Variovorax sp. CF313 RepID=J2JWH5_9BURK rbh
Flagellar biosynthesis pathway, component FliR {ECO:0000313|EMBL:EJL72205.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type III secretion system inner membrane R protein; K02421 flagellar biosynthetic protein FliR rbh
SCNpilot_cont_500_bf_scaffold_487_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23868..24134)
DNA (267bp) protein (89aa)
Flagellar biosynthesis pathway, component FliQ n=1 Tax=Variovorax sp. CF313 RepID=J3CIN1_9BURK
Flagellar biosynthesis pathway, component FliQ {ECO:0000313|EMBL:EJL72206.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
export protein FliQ family 3
SCNpilot_cont_500_bf_scaffold_487_29
unknown

Not on your lists

24800..25195
DNA (396bp) protein (132aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_487_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25300..25602)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZF8_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU36671.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Displaying items 1-30 of 53 in total

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