ggKbase home page

SCNpilot_cont_500_bf_scaffold_37

Search features with annotation key words

Displaying items 1-30 of 457 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_37_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..170)
DNA (168bp) protein (56aa)
ferredoxin n=1 Tax=Herbaspirillum lusitanum RepID=UPI0002DF4AB5
Variovorax paradoxus strain MEDvA23 contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35419.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
ferredoxin
SCNpilot_cont_500_bf_scaffold_37_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(235..1227)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KUK2_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_cont_500_bf_scaffold_37_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1224..2480)
DNA (1257bp) protein (419aa)
Phthalate 4,5-dioxygenase oxygenase subunit {ECO:0000313|EMBL:GAO53302.1}; EC=1.14.12.7 {ECO:0000313|EMBL:GAO53302.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phthalate 4,5-dioxygenase (EC:1.14.12.7); K07519 phthalate 4,5-dioxygenase [EC:1.14.12.7] rbh
Phthalate 4,5-dioxygenase n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46RU1_CUPPJ rbh
SCNpilot_cont_500_bf_scaffold_37_4
Burkholderia sp. CCGE1003, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2603..3538
DNA (936bp) protein (312aa)
Transcriptional regulator, LysR family n=1 Tax=Burkholderia sp. (strain CCGE1003) RepID=E1TI49_BURSG
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADN61910.1}; TaxID=640512 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1003).;"
SCNpilot_cont_500_bf_scaffold_37_5
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3583..4512)
DNA (930bp) protein (310aa)
Dihydrodipicolinate synthetase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
Dihydrodipicolinate synthetase id=4141953 bin=GWA2_Methylomirabilis_73_35 species=Marinobacter sp. ELB17 genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCNpilot_cont_500_bf_scaffold_37_6
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4529..5362)
DNA (834bp) protein (278aa)
FCD domain protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZZU4_9PROT
FCD domain protein {ECO:0000313|EMBL:EHM01342.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
GntR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_37_7
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5461..6585
DNA (1125bp) protein (375aa)
NAD(P) transhydrogenase alpha subunit (EC:1.6.1.2) rbh
NAD(P) transhydrogenase subunit alpha n=2 Tax=Alcaligenes xylosoxydans xylosoxydans RepID=R4XIA7_ALCXX rbh
NAD(P) transhydrogenase {ECO:0000313|EMBL:EFV83343.1}; NADP transhydrogenase subunit alpha {ECO:0000313|EMBL:AIR50756.1}; TaxID=562971 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans C54.;"
SCNpilot_cont_500_bf_scaffold_37_8
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6585..6914
DNA (330bp) protein (110aa)
NAD(P) transhydrogenase subunit alpha part 2; K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
NAD(P) transhydrogenase, subunit alpha part 2 n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VTW7_POLNA
NAD(P) transhydrogenase {ECO:0000313|EMBL:AJC21704.1}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
SCNpilot_cont_500_bf_scaffold_37_9
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6914..8347
DNA (1434bp) protein (478aa)
pntB; NAD(P) transhydrogenase subunit beta (EC:1.6.1.1); K00325 NAD(P) transhydrogenase subunit beta [EC:1.6.1.2] rbh
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
NAD(P) transhydrogenase subunit beta n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HEK2_ACHXA rbh
SCNpilot_cont_500_bf_scaffold_37_10

Not on your lists

comp(8390..9274)
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6AVR7_PSERE
Uncharacterized protein {ECO:0000313|EMBL:KKN91868.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_37_11
Brenneria sp. EniD312, Brenneria, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9278..10033)
DNA (756bp) protein (252aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Brenneria sp. EniD312 RepID=G7LVQ2_9ENTR
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:EHD19960.1}; TaxID=598467 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Brenneria.;" source="Brenneria sp. EniD312.;"
putative hydratase
SCNpilot_cont_500_bf_scaffold_37_12
Brenneria sp. EniD312, Brenneria, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10127..11650
DNA (1524bp) protein (508aa)
O-succinylbenzoate--CoA ligase {ECO:0000313|EMBL:EHD19962.1}; EC=6.2.1.26 {ECO:0000313|EMBL:EHD19962.1};; TaxID=598467 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Brenneria.;" source="Brenneria sp. EniD312.;"
O-succinylbenzoate--CoA ligase n=1 Tax=Brenneria sp. EniD312 RepID=G7LVQ4_9ENTR
putative CoA ligase
SCNpilot_cont_500_bf_scaffold_37_13
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11698..12465
DNA (768bp) protein (256aa)
Putative IclR-family regulatory protein n=1 Tax=Pseudomonas fluorescens (strain SBW25) RepID=C3K8B8_PSEFS
putative IclR family regulatory protein
Putative IclR-family regulatory protein {ECO:0000313|EMBL:CAY48443.1}; TaxID=216595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain SBW25).;"
SCNpilot_cont_500_bf_scaffold_37_14
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12477..13196)
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI0002D33013
Uncharacterized protein {ECO:0000313|EMBL:KHQ98513.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_37_15
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13220..14200)
DNA (981bp) protein (327aa)
Putative secreted protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I9W3_BORPD
bug91; hypothetical protein
Putative secreted protein {ECO:0000313|EMBL:CAP44514.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_cont_500_bf_scaffold_37_16
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14457..15068
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0003619F20
ssuE; putative FMN reductase SsuE
NADPH-dependent FMN reductase {ECO:0000313|EMBL:KHA76833.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
SCNpilot_cont_500_bf_scaffold_37_17
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15088..16068)
DNA (981bp) protein (327aa)
Putative uncharacterized protein n=1 Tax=Xanthomonas vesicatoria ATCC 35937 RepID=F0BAU3_9XANT
Uncharacterized protein {ECO:0000313|EMBL:KHL53925.1}; TaxID=92824 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. cannabis.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_37_18
Neisseria sp. oral taxon 014, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16104..17564)
DNA (1461bp) protein (487aa)
Uncharacterized protein n=1 Tax=Neisseria sp. oral taxon 014 str. F0314 RepID=D7N495_9NEIS
Uncharacterized protein {ECO:0000313|EMBL:EFI23257.1}; TaxID=641149 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria sp. oral taxon 014 str. F0314.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_37_19
unknown

Not on your lists

comp(17685..18524)
DNA (840bp) protein (280aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_37_20
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18637..21141)
DNA (2505bp) protein (835aa)
Putative lipoprotein n=1 Tax=Comamonas testosteroni S44 RepID=D8DE55_COMTE
Uncharacterized protein {ECO:0000313|EMBL:KGH31428.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
lipoprotein
SCNpilot_cont_500_bf_scaffold_37_21
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21184..23949)
DNA (2766bp) protein (922aa)
HasR n=1 Tax=Comamonas testosteroni S44 RepID=D8DE54_COMTE
HasR {ECO:0000313|EMBL:EFI58772.1}; TaxID=563045 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni S44.;"
hasR; TonB-dependent heme/hemoglobin receptor family protein rbh
SCNpilot_cont_500_bf_scaffold_37_22
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24053..25024)
DNA (972bp) protein (324aa)
Fec operon regulator FecR n=1 Tax=Serratia marcescens VGH107 RepID=M3CG32_SERMA
Transmembrane signaltransducer for ferric citrate transport {ECO:0000313|EMBL:BAO33782.1}; TaxID=1334564 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens SM39.;"
fecR; fec operon regulator FecR
SCNpilot_cont_500_bf_scaffold_37_23
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25021..25524)
DNA (504bp) protein (168aa)
ECF sigma factor, FecI family n=3 Tax=Azotobacter vinelandii RepID=C1DFE8_AZOVD
ECF sigma factor, FecI family
ECF sigma factor, FecI family {ECO:0000313|EMBL:AGK20436.1}; TaxID=1283331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii CA6.;"
SCNpilot_cont_500_bf_scaffold_37_24
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25695..26681)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J1EH99_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJE51671.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
putative BUG-like extracytoplasmic solute binding receptor, TTT family
SCNpilot_cont_500_bf_scaffold_37_25
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26761..28212)
DNA (1452bp) protein (484aa)
h16_A1114; NAD-dependent aldehyde dehydrogenase (EC:1.2.1.3) rbh
Salicylaldehyde dehydrogenase DoxF {ECO:0000313|EMBL:AEI76414.1}; EC=1.2.1.65 {ECO:0000313|EMBL:AEI76414.1};; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
salicylaldehyde dehydrogenase n=1 Tax=Cupriavidus sp. UYPR2.512 RepID=UPI00037483CF rbh
SCNpilot_cont_500_bf_scaffold_37_26
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28256..29824)
DNA (1569bp) protein (523aa)
mdlC; benzoylformate decarboxylase MdlC (EC:4.1.1.7); K01576 benzoylformate decarboxylase [EC:4.1.1.7] rbh
Benzoylformate decarboxylase MdlC {ECO:0000313|EMBL:AEI76413.1}; EC=4.1.1.7 {ECO:0000313|EMBL:AEI76413.1};; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
Benzoylformate decarboxylase MdlC n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0F0C8_CUPNN rbh
SCNpilot_cont_500_bf_scaffold_37_27
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29943..30857
DNA (915bp) protein (305aa)
LysR family transcriptional regulator n=1 Tax=Cupriavidus sp. UYPR2.512 RepID=UPI0003637566 rbh
h16_A1112; LysR family transcriptional regulator rbh
Transcriptional regulator, LysR-family {ECO:0000313|EMBL:CAJ92253.1}; TaxID=381666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337); (Ralstonia eutropha).;"
SCNpilot_cont_500_bf_scaffold_37_28
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30847..32088)
DNA (1242bp) protein (414aa)
Glycolate dehydrogenase (EC:1.1.99.14) rbh
Glycolate dehydrogenase n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XHZ6_ALCXX rbh
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
SCNpilot_cont_500_bf_scaffold_37_29
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32107..33192)
DNA (1086bp) protein (362aa)
Glycolate oxidase FAD binding subunit n=32 Tax=Bordetella RepID=F4L9M8_BORPC rbh
glcE; glycolate oxidase FAD binding subunit; K11472 glycolate oxidase FAD binding subunit rbh
Glycolate oxidase subunit {ECO:0000313|EMBL:CCJ64331.1}; TaxID=568706 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis (strain ATCC 9797 / DSM 5571 / NCTC 10739 /; 18323).;"
SCNpilot_cont_500_bf_scaffold_37_30
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33202..34698)
DNA (1497bp) protein (499aa)
Putative glycolate oxidase, subunit GlcD {ECO:0000313|EMBL:EFF76297.1}; EC=1.1.3.15 {ECO:0000313|EMBL:EFF76297.1};; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
glcD; glycolate oxidase subunit GlcD (EC:1.1.3.15); K00104 glycolate oxidase [EC:1.1.3.15] rbh
Putative glycolate oxidase, subunit GlcD n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XA32_9BURK rbh
Displaying items 1-30 of 457 in total

View Taxonomy