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SCNpilot_cont_500_bf_scaffold_39

Search features with annotation key words

Displaying items 1-30 of 349 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_39_1
unknown

Not on your lists

2..85
DNA (84bp) protein (28aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_39_2
Leisingera sp. ANG-M7, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

300..770
DNA (471bp) protein (157aa)
UPI0003D6BBD3 related cluster n=1 Tax=unknown RepID=UPI0003D6BBD3
MarR family transcriptional regulator {ECO:0000313|EMBL:KIC37166.1}; TaxID=1577902 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG-M7.;"
MarR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_39_3
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

818..1795
DNA (978bp) protein (326aa)
ABC transporter substrate-binding protein n=1 Tax=Cupriavidus sp. WS RepID=UPI000369321A
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_cont_500_bf_scaffold_39_4
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1808..2824
DNA (1017bp) protein (339aa)
amidohydrolase 2 id=14626324 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
amidohydrolase 2
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCNpilot_cont_500_bf_scaffold_39_5
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2821..4050
DNA (1230bp) protein (410aa)
Xaa-Pro aminopeptidase n=1 Tax=Rhizobium sp. CF080 RepID=J2JUB1_9RHIZ rbh
hypothetical protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_cont_500_bf_scaffold_39_6
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4057..4992
DNA (936bp) protein (312aa)
Putative Glyoxylate reductase (Glycolate reductase) n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SPG1_9BRAD
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
SCNpilot_cont_500_bf_scaffold_39_7
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5014..5757)
DNA (744bp) protein (248aa)
GntR family transcriptional regulator n=1 Tax=Achromobacter piechaudii HLE RepID=J4PBX8_9BURK rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:EJO31322.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
GntR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_39_8
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5947..6810
DNA (864bp) protein (288aa)
bleomycin resistance protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002DBD506 rbh
Bleomycin resistance protein {ECO:0000313|EMBL:KGY28749.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein 8 rbh
SCNpilot_cont_500_bf_scaffold_39_9
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6807..7508
DNA (702bp) protein (234aa)
Class II aldolase and adducin N-terminal domain-containing protein 3 n=1 Tax=Achromobacter piechaudii HLE RepID=J4QT59_9BURK rbh
Aldolase {ECO:0000313|EMBL:KGD92340.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
class II aldolase and adducin N-terminal domain-containing protein 3 rbh
SCNpilot_cont_500_bf_scaffold_39_10
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7519..8973
DNA (1455bp) protein (485aa)
Betaine-aldehyde dehydrogenase {ECO:0000313|EMBL:AJE98710.1}; EC=1.2.1.8 {ECO:0000313|EMBL:AJE98710.1};; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
2-hydroxymuconic semialdehyde dehydrogenase (EC:1.2.1.32); K10217 aminomuconate-semialdehyde dehydrogenase [EC:1.2.1.32] rbh
2-hydroxymuconic semialdehyde dehydrogenase n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D639E6 rbh
SCNpilot_cont_500_bf_scaffold_39_11
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8984..9175
DNA (192bp) protein (64aa)
Tautomerase {ECO:0000256|RuleBase:RU362032}; EC=5.3.2.- {ECO:0000256|RuleBase:RU362032};; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. BT03.;"
4-oxalocrotonate tautomerase family enzyme n=1 Tax=Burkholderia sp. BT03 RepID=J2RUD1_9BURK
4-oxalocrotonate tautomerase-like protein
SCNpilot_cont_500_bf_scaffold_39_12
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9211..10374
DNA (1164bp) protein (388aa)
Receptor family ligand binding region family protein 12 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HNI4_ACHXA rbh
receptor family ligand binding region family protein 12; K01999 branched-chain amino acid transport system substrate-binding protein rbh
Receptor family ligand binding region family protein 12 {ECO:0000313|EMBL:ADP15849.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCNpilot_cont_500_bf_scaffold_39_13

Not on your lists

10667..11581
DNA (915bp) protein (305aa)
Benzamide amidohydrolase {ECO:0000313|EMBL:BAJ23983.1}; EC=3.5.1.4 {ECO:0000313|EMBL:BAJ23983.1};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ABC transporter permease n=1 Tax=Pusillimonas noertemannii RepID=UPI0003100EB3 rbh
inner-membrane translocator rbh
SCNpilot_cont_500_bf_scaffold_39_14
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11703..12713
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002FE677A rbh
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein rbh
Inner-membrane translocator 28 {ECO:0000313|EMBL:ADP15851.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCNpilot_cont_500_bf_scaffold_39_15
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12710..13465
DNA (756bp) protein (252aa)
ABC transporter (EC:3.6.3.-) rbh
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI000312BBBA rbh
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGD92345.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
SCNpilot_cont_500_bf_scaffold_39_16
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13481..14176
DNA (696bp) protein (232aa)
ABC transporter (EC:3.6.3.-); K01996 branched-chain amino acid transport system ATP-binding protein rbh
ABC transporter ATP-binding protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002E979F8 rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGD92346.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
SCNpilot_cont_500_bf_scaffold_39_17
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14204..14983
DNA (780bp) protein (260aa)
sorbitol dehydrogenase (EC:1.1.1.14) rbh
Sorbitol dehydrogenase n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HNI9_ACHXA rbh
Dehydrogenase {ECO:0000313|EMBL:KGY25018.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
SCNpilot_cont_500_bf_scaffold_39_18
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15068..16051)
DNA (984bp) protein (328aa)
Extra-cytoplasmic solute receptor family protein 78 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HL41_ACHXA rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGD88163.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
extra-cytoplasmic solute receptor family protein 78 rbh
SCNpilot_cont_500_bf_scaffold_39_19
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16078..17232)
DNA (1155bp) protein (385aa)
peptidase M20D, amidohydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32] rbh
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00037C69D8
Peptidase M20D, amidohydrolase {ECO:0000313|EMBL:CDM23382.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCNpilot_cont_500_bf_scaffold_39_20
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17263..17826
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00037FD930
Transcriptional regulator, MarR-family {ECO:0000313|EMBL:CDM23381.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Transcriptional regulator, MarR family
SCNpilot_cont_500_bf_scaffold_39_21
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17840..18811)
DNA (972bp) protein (324aa)
transcriptional regulator n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002378530
Uncharacterized protein {ECO:0000313|EMBL:KGH26239.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
lysR; transcriptional regulator
SCNpilot_cont_500_bf_scaffold_39_22
Shimwellia blattae, Shimwellia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18839..19165
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Shimwellia blattae (strain ATCC 29907 / DSM 4481 / JCM 1650 / NBRC 105725 / CDC 9005-74) RepID=I2BEN6_SHIBC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFJ48990.1}; TaxID=630626 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shimwellia.;" source="Shimwellia blattae (strain ATCC 29907 / DSM 4481 / JCM 1650 / NBRC; 105725 / CDC 9005-74) (Escherichia blattae).;"
SCNpilot_cont_500_bf_scaffold_39_23
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19152..20132
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HRG0_AZOC5 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAF87179.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_39_24
Ralstonia sp. GA3-3, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20152..21141
DNA (990bp) protein (330aa)
ABC transporter substrate-binding protein n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002378533 rbh
h16_A2597; extra-cytoplasmic solute receptor
Extra-cytoplasmic solute receptor {ECO:0000313|EMBL:EON16146.1}; TaxID=1229514 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. GA3-3.;"
SCNpilot_cont_500_bf_scaffold_39_25
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21210..24701
DNA (3492bp) protein (1164aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
dnaE; DNA polymerase III subunit alpha (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7] rbh
DNA polymerase III alpha subunit n=7 Tax=Bordetella RepID=K0M8T8_BORPB rbh
SCNpilot_cont_500_bf_scaffold_39_26
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24705..26009)
DNA (1305bp) protein (435aa)
Membrane spanning protein involved in lipopolysaccharide biosynthesis n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0ETT3_CUPNN
rfaL; membrane spanning protein involved in lipopolysaccharide biosynthesis
Membrane spanning protein involved in lipopolysaccharide biosynthesis {ECO:0000313|EMBL:AEI78132.1}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
SCNpilot_cont_500_bf_scaffold_39_27
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26006..27082)
DNA (1077bp) protein (359aa)
Glycosyltransferase, group 1 family protein n=2 Tax=Ralstonia RepID=E2T1F2_9RALS rbh
group1 glycosyl transferase rbh
Glycosyl transferase group 1 {ECO:0000313|EMBL:ACD27536.1}; Flags: Precursor;; TaxID=402626 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12J).;"
SCNpilot_cont_500_bf_scaffold_39_28
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27079..28236)
DNA (1158bp) protein (386aa)
putative lipopolysaccharide heptosyltransferase III; K02849 heptosyltransferase III [EC:2.4.-.-]
Lipopolysaccharide heptosyltransferase III n=1 Tax=Ralstonia sp. PBA RepID=I9KT59_9RALS rbh
Lipopolysaccharide heptosyltransferase III {ECO:0000313|EMBL:EIZ03415.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
SCNpilot_cont_500_bf_scaffold_39_29
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28233..29192)
DNA (960bp) protein (320aa)
waaF; ADP-heptose--LPS-heptosyltransferase II (EC:2.4.-.-); K02843 heptosyltransferase II [EC:2.4.-.-] rbh
ADP-heptose-LPS heptosyltransferase II n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9ITQ5_BORPD rbh
Heptosyltransferase {ECO:0000313|EMBL:KCB38262.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
SCNpilot_cont_500_bf_scaffold_39_30
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29322..31073
DNA (1752bp) protein (584aa)
Lipid A export ATP-binding/permease protein MsbA {ECO:0000256|HAMAP-Rule:MF_01703}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01703};; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
msbA1; lipid A exporting ATP-binding/permease ABC transporter; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] rbh
ATP-binding protein n=1 Tax=Bordetella holmesii RepID=UPI00036807AB rbh
Displaying items 1-30 of 349 in total

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