ggKbase home page

SCNpilot_cont_500_bf_scaffold_143

Search features with annotation key words

Displaying items 1-30 of 133 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_143_1
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(337..1239)
DNA (903bp) protein (301aa)
Nicotinate-nucleotide diphosphorylase (Carboxylating) {ECO:0000313|EMBL:KCB45561.1}; EC=2.4.2.19 {ECO:0000313|EMBL:KCB45561.1};; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
nadC; nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19); K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
Putative nicotinate-nucleotide pyrophosphorylase n=1 Tax=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) RepID=Q7W429_BORPA
SCNpilot_cont_500_bf_scaffold_143_2
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1350..2279)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4X7B5_9BURK
Predicted NAD regulator in Alphaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:EFF77321.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
SCNpilot_cont_500_bf_scaffold_143_3
unknown

Not on your lists

comp(2287..2508)
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_143_4
Bordetella avium, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2593..4107)
DNA (1515bp) protein (505aa)
dcaH; 3-hydroxy-acyl-CoA dehydrogenase (EC:1.1.1.-); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] rbh
Hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:CAJ50803.1}; EC=1.1.1.- {ECO:0000313|EMBL:CAJ50803.1};; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella avium (strain 197N).;"
Hydroxyacyl-CoA dehydrogenase n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KU57_BORA1 rbh
SCNpilot_cont_500_bf_scaffold_143_5
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4133..5284)
DNA (1152bp) protein (384aa)
acd3; acyl-CoA dehydrogenase (EC:1.3.99.3); K06446 acyl-CoA dehydrogenase [EC:1.3.99.-] rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:CAP40698.1}; EC=1.3.99.3 {ECO:0000313|EMBL:CAP40698.1};; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
Acyl-CoA dehydrogenase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HY86_BORPD rbh
SCNpilot_cont_500_bf_scaffold_143_6
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5296..5937)
DNA (642bp) protein (214aa)
TetR family transcriptional regulator n=2 Tax=Bordetella holmesii RepID=M5NIW5_9BORD
Transcriptional regulator, TetR family {ECO:0000313|EMBL:KCB37670.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
TetR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_143_7
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6033..6788)
DNA (756bp) protein (252aa)
ribE; riboflavin synthase subunit alpha (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] rbh
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:ADP15932.1}; EC=2.5.1.9 {ECO:0000313|EMBL:ADP15932.1};; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
Riboflavin synthase, alpha subunit n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HPU8_ACHXA rbh
SCNpilot_cont_500_bf_scaffold_143_8
unknown

Not on your lists

6960..7058
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_143_9
unknown

Not on your lists

7055..7144
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_143_10
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7144..8853
DNA (1710bp) protein (570aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenit
kdpA; K+ transporting ATPase A chain (EC:3.6.3.12); K01546 K+-transporting ATPase ATPase A chain [EC:3.6.3.12] rbh
Potassium-transporting ATPase A chain n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F1Q0_9BURK rbh
SCNpilot_cont_500_bf_scaffold_143_11
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8874..11000
DNA (2127bp) protein (709aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenit
kdpB; K+-transporting ATPase B (EC:3.6.3.12); K01547 K+-transporting ATPase ATPase B chain [EC:3.6.3.12] rbh
Potassium-transporting ATPase B chain n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F1P9_9BURK rbh
SCNpilot_cont_500_bf_scaffold_143_12
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11027..11629
DNA (603bp) protein (201aa)
kdpC; potassium-transporting ATPase subunit C; K01548 K+-transporting ATPase ATPase C chain [EC:3.6.3.12]
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=1331279 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis ST
Potassium-transporting ATPase C chain n=33 Tax=Bordetella RepID=F4LGG1_BORPC
SCNpilot_cont_500_bf_scaffold_143_13
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11657..14446
DNA (2790bp) protein (930aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
kdpD; sensor protein KdpD (EC:2.7.13.3); K07646 two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] rbh
Sensor protein KdpD n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F1P7_9BURK rbh
SCNpilot_cont_500_bf_scaffold_143_14
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14419..15111
DNA (693bp) protein (231aa)
Two component response regulator n=1 Tax=Achromobacter xylosoxidans C54 RepID=E5UE95_ALCXX rbh
DNA-binding response regulator KdpE rbh
Transcriptional regulator {ECO:0000313|EMBL:AIR50224.1}; Two component response regulator {ECO:0000313|EMBL:EFV82792.1}; TaxID=562971 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans C54.;"
SCNpilot_cont_500_bf_scaffold_143_15
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15245..16462
DNA (1218bp) protein (406aa)
pleD; response regulator PleD (EC:2.7.7.65)
Response regulator PleD {ECO:0000313|EMBL:AEI75790.1}; EC=2.7.7.65 {ECO:0000313|EMBL:AEI75790.1};; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
Response regulator PleD n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0EUS9_CUPNN
SCNpilot_cont_500_bf_scaffold_143_16
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16624..16947
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HRL7_ACHXA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP19636.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCNpilot_cont_500_bf_scaffold_143_17
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16998..17801)
DNA (804bp) protein (268aa)
Transcriptional regulator protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIG1_9BURK
Transcriptional regulator protein {ECO:0000313|EMBL:EIK89001.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
transcriptional regulator protein
SCNpilot_cont_500_bf_scaffold_143_18
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17985..18464
DNA (480bp) protein (160aa)
Putative flavoprotein oxidoreductase; K09024 flavin reductase [EC:1.5.1.-]
Flavoprotein oxidoreductase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIG0_9BURK
Flavoprotein oxidoreductase {ECO:0000313|EMBL:EIK89000.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
SCNpilot_cont_500_bf_scaffold_143_19
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18487..18834
DNA (348bp) protein (116aa)
Glyoxalase protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIF9_9BURK
Glyoxalase protein {ECO:0000313|EMBL:EIK88999.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
glyoxalase
SCNpilot_cont_500_bf_scaffold_143_20
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18899..19927
DNA (1029bp) protein (343aa)
Luciferase-like protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIF8_9BURK rbh
Luciferase-like protein {ECO:0000313|EMBL:EIK88998.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
luciferase-like protein
SCNpilot_cont_500_bf_scaffold_143_21
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19932..20777
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Burkholderia kururiensis RepID=UPI0003475CF1
Alpha/beta hydrolase fold family protein {ECO:0000313|EMBL:KKB66463.1}; TaxID=1249470 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei MSHR1079.;"
alpha/beta hydrolase
SCNpilot_cont_500_bf_scaffold_143_22
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20810..21790
DNA (981bp) protein (327aa)
Extra-cytoplasmic solute receptor protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIF7_9BURK rbh
Extra-cytoplasmic solute receptor protein {ECO:0000313|EMBL:EIK88997.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
bug; ABC transporter substrate-binding protein
SCNpilot_cont_500_bf_scaffold_143_23
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21819..23090)
DNA (1272bp) protein (424aa)
Transporter, putative n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4Y042_ALCXX rbh
transporter, putative rbh
Transporter, putative {ECO:0000313|EMBL:CCH10224.1}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
SCNpilot_cont_500_bf_scaffold_143_24
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23187..23522)
DNA (336bp) protein (112aa)
multidrug transporter n=1 Tax=Janthinobacterium lividum RepID=UPI000288DB93
Small Multidrug Resistance family protein {ECO:0000313|EMBL:CDG83491.1}; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
small multidrug resistance protein; K03297 small multidrug resistance protein, SMR family
SCNpilot_cont_500_bf_scaffold_143_25
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23539..25590)
DNA (2052bp) protein (684aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2G920_BURVI rbh
diguanylate cyclase/phosphodiesterase rbh
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:ERJ39555.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
SCNpilot_cont_500_bf_scaffold_143_26
unknown

Not on your lists

25849..26067
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_143_27
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26268..27254
DNA (987bp) protein (329aa)
Bordetella petrii strain DSM 12804, complete genome n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HYQ1_BORPD rbh
Putative permease {ECO:0000313|EMBL:KCB37863.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
hypothetical protein; K07089 rbh
SCNpilot_cont_500_bf_scaffold_143_28
Burkholderia sp. RPE67, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27251..28204)
DNA (954bp) protein (318aa)
LysR family transcriptional regulator n=1 Tax=Burkholderia sp. YI23 RepID=G8MJJ4_9BURK rbh
lysR; LysR family transcriptional regulator rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:BAO90573.1}; TaxID=758796 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE67.;"
SCNpilot_cont_500_bf_scaffold_143_29
Raoultella ornithinolytica, Raoultella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28337..29068)
DNA (732bp) protein (244aa)
livF3; ABC transporter ATPase (EC:3.6.3.22); K01996 branched-chain amino acid transport system ATP-binding protein
Putative uncharacterized protein n=1 Tax=Klebsiella oxytoca 10-5250 RepID=H3MZS3_KLEOX rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AJF73210.1}; TaxID=54291 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Raoultella.;" source="Raoultella ornithinolytica (Klebsiella ornithinolytica).;"
SCNpilot_cont_500_bf_scaffold_143_30
Klebsiella oxytoca, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29065..29844)
DNA (780bp) protein (260aa)
livG3; ABC transporter ATPase (EC:3.6.3.22)
Putative uncharacterized protein n=1 Tax=Klebsiella oxytoca 10-5250 RepID=H3MZS4_KLEOX rbh
Uncharacterized protein {ECO:0000313|EMBL:EHT12837.1}; TaxID=883125 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella oxytoca 10-5250.;"
Displaying items 1-30 of 133 in total

View Taxonomy