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SCNpilot_cont_500_bf_scaffold_219

Search features with annotation key words

Displaying items 1-30 of 128 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_219_1
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(615..1751)
DNA (1137bp) protein (379aa)
deoxyguanosinetriphosphate triphosphohydrolase-like protein; K01129 dGTPase [EC:3.1.5.1] rbh
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=34 Tax=Bordetella RepID=DGTL1_BORBR rbh
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
SCNpilot_cont_500_bf_scaffold_219_2
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1782..2891)
DNA (1110bp) protein (370aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
aroB; 3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4] rbh
3-dehydroquinate synthase n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7SZ46_ALCXX rbh
SCNpilot_cont_500_bf_scaffold_219_3
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2888..3511)
DNA (624bp) protein (208aa)
aroK; shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71]
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109, ECO:0000313|EMBL:CAP45263.1};; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
Shikimate kinase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IHP5_BORPD
SCNpilot_cont_500_bf_scaffold_219_4
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3713..6076
DNA (2364bp) protein (788aa)
Multimodular transpeptidase-transglycosylase (EC:2.4.1.129 3.4.-.-) rbh
Multimodular transpeptidase-transglycosylase {ECO:0000313|EMBL:CCH06291.1}; EC=2.4.1.129 {ECO:0000313|EMBL:CCH06291.1};; EC=3.4.-.- {ECO:0000313|EMBL:CCH06291.1};; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
Multimodular transpeptidase-transglycosylase n=2 Tax=Alcaligenes xylosoxydans xylosoxydans RepID=R4XNW2_ALCXX rbh
SCNpilot_cont_500_bf_scaffold_219_5
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6216..6557)
DNA (342bp) protein (114aa)
Protein CyaY n=8 Tax=Bordetella RepID=CYAY_BORBR
cyaY; hypothetical protein; K06202 CyaY protein
Protein CyaY {ECO:0000255|HAMAP-Rule:MF_00142}; TaxID=257310 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50); (Alcaligenes bronchisepticus).;"
SCNpilot_cont_500_bf_scaffold_219_6
unknown

Not on your lists

6577..6882
DNA (306bp) protein (102aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_219_7
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6879..8171
DNA (1293bp) protein (431aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
lysA; diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20] rbh
Diaminopimelate decarboxylase n=1 Tax=Bordetella avium (strain 197N) RepID=Q2L205_BORA1 rbh
SCNpilot_cont_500_bf_scaffold_219_8
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8193..9098)
DNA (906bp) protein (302aa)
Transcriptional regulator, lysR family protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S6M7_9BURK
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG25062.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
LysR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_219_9
Burkholderia rhizoxinica, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9195..9959
DNA (765bp) protein (255aa)
Plasmid pBRH01, complete sequence n=1 Tax=Burkholderia rhizoxinica (strain DSM 19002 / CIP 109453 / HKI 454) RepID=E5AU60_BURRH
hypothetical protein; K07090
Plasmid pBRH01, complete sequence {ECO:0000313|EMBL:CBW76634.1}; TaxID=882378 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia rhizoxinica (strain DSM 19002 / CIP 109453 / HKI 454).;"
SCNpilot_cont_500_bf_scaffold_219_10
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9972..11048)
DNA (1077bp) protein (359aa)
Uncharacterized protein id=2101421 bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
SCNpilot_cont_500_bf_scaffold_219_11
Streptomyces sp. AcH 505, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11072..11902)
DNA (831bp) protein (277aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Synechococcus sp. PCC 7502 RepID=K9SXN0_9SYNE
Uncharacterized protein {ECO:0000313|EMBL:KIF69850.1}; TaxID=352211 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
nitrate/sulfonate/bicarbonate ABC transporter permease
SCNpilot_cont_500_bf_scaffold_219_12
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11917..12756)
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Bacillus fordii RepID=UPI00037AA3E7
nitrate/sulfonate/bicarbonate ABC transporter ATPase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
SCNpilot_cont_500_bf_scaffold_219_13

Not on your lists

comp(12899..13687)
DNA (789bp) protein (263aa)
Putative GntR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMY4_9SPHN
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48907.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
GntR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_219_14
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13869..14750
DNA (882bp) protein (294aa)
Putative uncharacterized protein n=1 Tax=Rhodobacteraceae bacterium HTCC2083 RepID=B6AU52_9RHOB
nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein; K02051 NitT/TauT family transport system substrate-binding protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
SCNpilot_cont_500_bf_scaffold_219_15
Pandoraea sputorum, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15084..16688
DNA (1605bp) protein (535aa)
L-amino-acid oxidase (EC:1.4.3.2); K00274 monoamine oxidase [EC:1.4.3.4] rbh
hypothetical protein n=1 Tax=Duganella zoogloeoides RepID=UPI000382E6C5 rbh
Monoamine oxidase {ECO:0000313|EMBL:AJC19148.1}; TaxID=93222 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sputorum.;"
SCNpilot_cont_500_bf_scaffold_219_16
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16713..17105
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00037BED37
Uncharacterized protein {ECO:0000313|EMBL:KHS00097.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
cytochrome c class I
SCNpilot_cont_500_bf_scaffold_219_17

Not on your lists

17136..17639
DNA (504bp) protein (168aa)
Endoribonuclease L-PSP n=1 Tax=uncultured organism RepID=T1WAA1_9ZZZZ
Endoribonuclease L-PSP {ECO:0000313|EMBL:AGU11596.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
endoribonuclease L-PSP
SCNpilot_cont_500_bf_scaffold_219_18
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17816..18892
DNA (1077bp) protein (359aa)
Outer membrane porin protein n=1 Tax=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) RepID=Q7W3G1_BORPA rbh
Uncharacterized protein {ECO:0000313|EMBL:AJC20158.1}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
outer membrane porin protein precursor rbh
SCNpilot_cont_500_bf_scaffold_219_19
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18952..19614
DNA (663bp) protein (221aa)
Transcriptional regulator, XRE family n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JGV9_HYPSM
Uncharacterized protein {ECO:0000313|EMBL:AIU28830.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
XRE family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_219_20
Pandoraea sputorum, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19648..20406)
DNA (759bp) protein (253aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ66_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:AJC17887.1}; TaxID=93222 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sputorum.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_219_21
Spongiibacter sp. IMCC21906, Spongiibacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20602..21291
DNA (690bp) protein (230aa)
GntR family transcriptional regulator n=1 Tax=Rhodococcus opacus RepID=UPI00029CCBB0
Transcriptional regulator {ECO:0000313|EMBL:AKH68096.1}; TaxID=1620392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Spongiibacter.;" source="Spongiibacter sp. IMCC21906.;"
ohpR; GntR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_219_22
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21460..22440
DNA (981bp) protein (327aa)
Putative Glyoxylate reductase (Glycolate reductase) n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SPG1_9BRAD
phosphoglycerate dehydrogenase-like oxidoreductase
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_cont_500_bf_scaffold_219_23
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22437..23645
DNA (1209bp) protein (403aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SPG2_9BRAD rbh
hypothetical protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_cont_500_bf_scaffold_219_24
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

23717..24727
DNA (1011bp) protein (337aa)
Extra-cytoplasmic solute receptor n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GQL6_CUPNN
LacI family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
SCNpilot_cont_500_bf_scaffold_219_25
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24732..25709
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA) RepID=I4BWP6_ANAMD
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_cont_500_bf_scaffold_219_26
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25797..26498
DNA (702bp) protein (234aa)
TetR family transcriptional regulator n=1 Tax=Comamonas testosteroni RepID=UPI000369A6B5 rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:EHN63057.1}; TaxID=1009852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni ATCC 11996.;"
TetR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_219_27
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26538..27584)
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0E9D2_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EOA02331.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_219_28
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27598..28422)
DNA (825bp) protein (275aa)
Putative alpha/beta hydrolase fold n=1 Tax=Azospirillum brasilense Sp245 RepID=G8B0I6_AZOBR rbh
putative alpha/beta hydrolase fold rbh
Putative alpha/beta hydrolase fold {ECO:0000313|EMBL:CCD03695.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_cont_500_bf_scaffold_219_29
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28439..29665)
DNA (1227bp) protein (409aa)
Salicylate 1-monooxygenase (NahW) n=1 Tax=Comamonas testosteroni ATCC 11996 RepID=H1RXD4_COMTE rbh
Salicylate 1-monooxygenase (NahW) {ECO:0000313|EMBL:EHN63052.1}; TaxID=1009852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni ATCC 11996.;"
nahW; salicylate 1-monooxygenase (NahW) rbh
SCNpilot_cont_500_bf_scaffold_219_30
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29771..30505)
DNA (735bp) protein (245aa)
amino acid ABC transporter ATPase n=1 Tax=Comamonas testosteroni RepID=UPI0002D84795 rbh
Branched chain amino acid ABC transporter ATPase {ECO:0000313|EMBL:EHN63051.1}; TaxID=1009852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni ATCC 11996.;"
livG2; branched-chain amino acid ABC transporter,ATP-binding protein
Displaying items 1-30 of 128 in total

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