ggKbase home page

SCNpilot_cont_500_bf_scaffold_264

Search features with annotation key words

Displaying items 1-30 of 221 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_264_1
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

727..966
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CVS3_THIA3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ90412.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
SCNpilot_cont_500_bf_scaffold_264_2
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

966..1385
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CVS2_THIA3
conserved hypothetical protein with PIN domain
Uncharacterized protein {ECO:0000313|EMBL:CAZ90411.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
SCNpilot_cont_500_bf_scaffold_264_3
unknown

Not on your lists

1684..1818
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_264_4
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2146..4911
DNA (2766bp) protein (922aa)
CRISPR-associated endonuclease/helicase Cas3 {ECO:0000313|EMBL:KFB74150.1}; EC=3.1.-.- {ECO:0000313|EMBL:KFB74150.1};; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
Putative CRISPR-associated helicase Cas3 n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RE57_9RHOO rbh
CRISPR-associated helicase Cas3; K07012 rbh
SCNpilot_cont_500_bf_scaffold_264_5
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4959..6560
DNA (1602bp) protein (534aa)
Putative uncharacterized protein n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RE56_9RHOO rbh
CRISPR-associated protein CasA/Cse1 {ECO:0000313|EMBL:EXI76137.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
CRISPR-associated protein, Cse1 family rbh
SCNpilot_cont_500_bf_scaffold_264_6
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6585..7088
DNA (504bp) protein (168aa)
Putative CRISPR-associated protein, Cse2 family n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RE55_9RHOO
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_cont_500_bf_scaffold_264_7
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7141..8238
DNA (1098bp) protein (366aa)
Putative CRISPR-associated protein, Cse4 family n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RE54_9RHOO
CRISPR system Cascade subunit CasC {ECO:0000313|EMBL:KFB74153.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_264_8
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8242..8955
DNA (714bp) protein (238aa)
Putative uncharacterized protein n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RE53_9RHOO
CRISPR-associated protein Cas5 family
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_cont_500_bf_scaffold_264_9
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8957..9616
DNA (660bp) protein (220aa)
Putative CRISPR-associated protein, Cse3 family n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RE52_9RHOO
Putative CRISPR-associated protein, Cse3 family {ECO:0000313|EMBL:EGK71183.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
CRISPR-associated protein, Cse3 family
SCNpilot_cont_500_bf_scaffold_264_10
Pseudomonas balearica, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9686..10573
DNA (888bp) protein (296aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1123016 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas balearica DSM 6083.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Pseudomonas stutzeri MF28 RepID=U3HM82_PSEST rbh
CRISPR-associated Cas1 family protein; K15342 CRISP-associated protein Cas1 rbh
SCNpilot_cont_500_bf_scaffold_264_11
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10573..10872
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri TS44 PF1_PSEST">RepID=I4JPF1_PSEST
Uncharacterized protein {ECO:0000313|EMBL:EIK54341.1}; TaxID=477228 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri TS44.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_264_12
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12791..13324
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SLX5_METPP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM96564.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
SCNpilot_cont_500_bf_scaffold_264_13
Rothia mucilaginosa, Rothia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14710..15426)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Erwinia amylovora Ea644 RepID=N0G7F6_ERWAM
Uncharacterized protein {ECO:0000313|EMBL:EHB88004.1}; TaxID=563033 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Rothia.;" source="Rothia mucilaginosa M508.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_264_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15532..16938)
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V1W8_VARPE rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADU37971.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_500_bf_scaffold_264_15
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17079..17687
DNA (609bp) protein (203aa)
K06966 n=1 Tax=Pseudomonas pseudoalcaligenes CECT 5344 RepID=I7K180_PSEPS
Uncharacterized protein {ECO:0000313|EMBL:CDR92378.1}; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes.;"
LOG family protein
SCNpilot_cont_500_bf_scaffold_264_16
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17780..18193
DNA (414bp) protein (138aa)
Uncharacterized protein n=2 Tax=Cupriavidus RepID=Q1LM09_RALME
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF08817.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
SCNpilot_cont_500_bf_scaffold_264_17
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18313..18801
DNA (489bp) protein (163aa)
Endoribonuclease L-PSP n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TWD5_9BRAD
endoribonuclease L-PSP
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
SCNpilot_cont_500_bf_scaffold_264_18
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18832..19887
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T3S8_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:CCE01105.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
hypothetical protein; K07045
SCNpilot_cont_500_bf_scaffold_264_19
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19927..21438)
DNA (1512bp) protein (504aa)
L-threonine dehydratase {ECO:0000256|RuleBase:RU362012}; EC=4.3.1.19 {ECO:0000256|RuleBase:RU362012};; Threonine deaminase {ECO:0000256|RuleBase:RU362012}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
ilvA; threonine dehydratase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19] rbh
Threonine ammonia-lyase, biosynthetic n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4X4J0_9BURK rbh
SCNpilot_cont_500_bf_scaffold_264_20
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21623..22183
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0FCW6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EHK63759.1}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenitoxydans SY8.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_264_21
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22203..22565
DNA (363bp) protein (121aa)
Putative uncharacterized protein n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T4M1_ALCXX
Uncharacterized protein {ECO:0000313|EMBL:EGP44731.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
FIG138056: a glutathione-dependent thiol reductase
SCNpilot_cont_500_bf_scaffold_264_22
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22710..26639
DNA (3930bp) protein (1310aa)
FAD/FMN-containing dehydrogenases n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XTH2_ALCXX rbh
FAD/FMN-containing dehydrogenases {ECO:0000313|EMBL:CCH06512.1}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
FAD/FMN-containing dehydrogenases rbh
SCNpilot_cont_500_bf_scaffold_264_23
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26683..27441
DNA (759bp) protein (253aa)
Flagellar brake protein YcgR n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=YCGR_LEPCP
type IV pilus assembly PilZ
Flagellar brake protein YcgR {ECO:0000255|HAMAP-Rule:MF_01457}; Cyclic di-GMP binding protein YcgR {ECO:0000255|HAMAP-Rule:MF_01457}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_cont_500_bf_scaffold_264_24
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27461..27931
DNA (471bp) protein (157aa)
Uncharacterized protein n=2 Tax=Bordetella bronchiseptica RepID=K0MMD1_BORBM
hypothetical protein
Histidine triad domain protein {ECO:0000313|EMBL:KDD59940.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
SCNpilot_cont_500_bf_scaffold_264_25
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27933..29132)
DNA (1200bp) protein (400aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95) rbh
D-3-phosphoglycerate dehydrogenase n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T0Y6_ALCXX rbh
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EGP46065.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
SCNpilot_cont_500_bf_scaffold_264_26
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29237..30523)
DNA (1287bp) protein (429aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
phoR; phosphate regulon sensor protein (EC:2.7.3.-); K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] rbh
Phosphate regulon sensor kinase PhoR n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F2P2_9BURK rbh
SCNpilot_cont_500_bf_scaffold_264_27
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30668..31363)
DNA (696bp) protein (232aa)
Phosphate regulon transcriptional regulatory protein n=38 Tax=Bordetella RepID=F4L8M1_BORPC rbh
phoB; phosphate regulon transcriptional regulatory protein; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB rbh
Phosphate regulon transcriptional regulatory protein {ECO:0000313|EMBL:CCJ61946.1}; TaxID=568706 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis (strain ATCC 9797 / DSM 5571 / NCTC 10739 /; 18323).;"
SCNpilot_cont_500_bf_scaffold_264_28
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31482..31931
DNA (450bp) protein (150aa)
Uncharacterized protein n=2 Tax=Thauera RepID=N6XRJ6_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO96738.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_264_29
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31928..32704
DNA (777bp) protein (259aa)
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase (EC:2.1.1.-); K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201] rbh
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000256|HAMAP-Rule:MF_01813}; Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I116_BORPD rbh
SCNpilot_cont_500_bf_scaffold_264_30
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32940..33920
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I121_BORPD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CAP40815.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
Displaying items 1-30 of 221 in total

View Taxonomy