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SCNpilot_cont_500_bf_scaffold_594

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_594_1
unknown

Not on your lists

comp(2..76)
DNA (75bp) protein (25aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_594_2
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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500..1135
DNA (636bp) protein (212aa)
Putative threonine efflux protein n=1 Tax=Rhizobium sp. CF142 RepID=J1TCD1_9RHIZ rbh
leucine efflux protein rbh
Leucine efflux protein {ECO:0000313|EMBL:ADY66636.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_cont_500_bf_scaffold_594_3
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1137..2063)
DNA (927bp) protein (309aa)
Transcriptional family n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MGH9_9BURK rbh
Transcriptional family {ECO:0000313|EMBL:EIK88319.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
LysR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_594_4
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2186..3136
DNA (951bp) protein (317aa)
thioredoxin reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] rbh
Thioredoxin reductase n=1 Tax=Stenotrophomonas maltophilia RA8 RepID=M5D7E1_STEMA rbh
Thioredoxin reductase {ECO:0000313|EMBL:AKC88021.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
SCNpilot_cont_500_bf_scaffold_594_5
Bifidobacterium psychraerophilum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3200..4096
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Bacillus sp. EGD-AK10 RepID=U1YPR8_9BACI
Threonyl-tRNA synthetase {ECO:0000313|EMBL:KFI81609.1}; TaxID=218140 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium psychraerophilum.;"
hypothetical protein; K09164 hypothetical protein
SCNpilot_cont_500_bf_scaffold_594_6
Burkholderia sp. SJ98, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4084..4740)
DNA (657bp) protein (219aa)
Glutathione S-transferase domain protein n=1 Tax=Burkholderia sp. SJ98 RepID=K8RGJ4_9BURK
glutathione S-transferase, N-terminal domain protein
Glutathione S-transferase domain protein {ECO:0000313|EMBL:EKS70293.1}; TaxID=406819 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. SJ98.;"
SCNpilot_cont_500_bf_scaffold_594_7
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4754..5824)
DNA (1071bp) protein (357aa)
Phenylacetaldoxime dehydratase n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S843_9BURK rbh
Phenylacetaldoxime dehydratase {ECO:0000313|EMBL:EHP41312.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
oxd; putative phenylacetaldoxime dehydratase rbh
SCNpilot_cont_500_bf_scaffold_594_8
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5848..7479)
DNA (1632bp) protein (544aa)
Major facilitator transporter n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QH70_RALPI rbh
Major facilitator transporter {ECO:0000313|EMBL:AGW90310.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
major facilitator superfamily transporter
SCNpilot_cont_500_bf_scaffold_594_9
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7516..8448)
DNA (933bp) protein (311aa)
Aliphatic nitrilase NitA {ECO:0000313|EMBL:AJK49002.1}; EC=3.5.5.7 {ECO:0000313|EMBL:AJK49002.1};; TaxID=595500 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae PG1.;"
nitrilase 4 (EC:3.5.5.1); K01501 nitrilase [EC:3.5.5.1] rbh
Nitrilase n=1 Tax=uncultured bacterium RepID=E1A0Z9_9BACT rbh
SCNpilot_cont_500_bf_scaffold_594_10
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8573..9466
DNA (894bp) protein (298aa)
Transcriptional regulator LysR family n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GXH1_CUPNN rbh
LysR family transcriptional regulator rbh
Transcriptional regulator LysR family {ECO:0000313|EMBL:AEI82041.1}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
SCNpilot_cont_500_bf_scaffold_594_11
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9482..9961)
DNA (480bp) protein (160aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Hoeflea sp. 108 RepID=UPI000373EE87 rbh
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:ESX78584.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
3-demethylubiquinone-9 3-methyltransferase
SCNpilot_cont_500_bf_scaffold_594_12
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10171..10578
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IUE3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIF34345.1}; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
glutathione-dependent formaldehyde-activating GFA
SCNpilot_cont_500_bf_scaffold_594_13
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10740..11471)
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003491A75
Anti-sigma-K factor RskA {ECO:0000313|EMBL:KHQ94267.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
anti-sigma-K factor RskA
SCNpilot_cont_500_bf_scaffold_594_14
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11468..11794)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003767928
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KHS00252.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
sigma-24 (FecI-like); K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_500_bf_scaffold_594_15
Pandoraea sputorum, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12265..12849
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000345EB5E rbh
Fasciclin {ECO:0000313|EMBL:AJC18700.1}; TaxID=93222 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sputorum.;"
beta-Ig-H3/fasciclin
SCNpilot_cont_500_bf_scaffold_594_trna_2
unknown

Not on your lists

comp(12934..13018)
DNA (85bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_594_16
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13078..13428)
DNA (351bp) protein (117aa)
Glutathione-dependent formaldehyde-activating, GFA n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V8A1_SPHWW
glutathione-dependent formaldehyde-activating protein
Glutathione-dependent formaldehyde-activating, GFA {ECO:0000313|EMBL:ABQ68517.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_500_bf_scaffold_594_17
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13448..15352)
DNA (1905bp) protein (635aa)
ATPase component ABC-type dipeptide/oligopeptide/nickel transport system n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SGM3_METPP rbh
peptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
SCNpilot_cont_500_bf_scaffold_594_18
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15352..16815)
DNA (1464bp) protein (488aa)
Putative oligopeptide ABC-transporter permease n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HX90_BORPD rbh
oligopeptide ABC-transporter permease; K02034 peptide/nickel transport system permease protein rbh
Putative oligopeptide ABC-transporter permease {ECO:0000313|EMBL:CAP43732.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_cont_500_bf_scaffold_594_19
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16820..17797)
DNA (978bp) protein (326aa)
Oligopeptide transport system permease protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HX92_BORPD rbh
ABC transporter, permease protein {ECO:0000313|EMBL:KCV64739.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
oligopeptide transport system permease; K02033 peptide/nickel transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_594_20
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17794..20091)
DNA (2298bp) protein (766aa)
Putative extracellular solute-binding protein n=1 Tax=Bordetella bronchiseptica (strain MO149) RepID=K0MUE0_BORBM rbh
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:KCV64742.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
extracellular solute-binding protein rbh
SCNpilot_cont_500_bf_scaffold_594_21
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20295..21260
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I8M2_9BURK
hypothetical protein
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_cont_500_bf_scaffold_594_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21273..22001)
DNA (729bp) protein (243aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI0003828356
ompw family protein; K07275 outer membrane protein
OmpW family protein {ECO:0000313|EMBL:ADU35274.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_500_bf_scaffold_594_23
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22182..23096
DNA (915bp) protein (305aa)
BrkB transmembrane protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I688_BORPD rbh
BrkB transmembrane protein; K07058 membrane protein rbh
BrkB transmembrane protein {ECO:0000313|EMBL:CAP44279.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_cont_500_bf_scaffold_594_24
unknown

Not on your lists

23135..23443
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_594_25
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23454..23654)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4X8J9_9BURK
Putative N-acetyltransferase YedL {ECO:0000313|EMBL:KCV59295.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_594_26
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23731..24135)
DNA (405bp) protein (135aa)
endoribonuclease L-PSP n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00037F8D2D
Endoribonuclease L-PSP {ECO:0000313|EMBL:EZP39623.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
translation initiation inhibitor, yjgh family (abme )
SCNpilot_cont_500_bf_scaffold_594_27
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24157..25344)
DNA (1188bp) protein (396aa)
RSp0036; acyl-CoA dehydrogenase (EC:1.3.99.3); K00249 acyl-CoA dehydrogenase [EC:1.3.99.3] rbh
acyl-CoA dehydrogenase n=1 Tax=Comamonas sp. B-9 RepID=UPI000395733F rbh
Putative acyl-CoA dehydrogenase {ECO:0000313|EMBL:CDM25522.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCNpilot_cont_500_bf_scaffold_594_28
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25454..26281)
DNA (828bp) protein (276aa)
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ELX13279.1}; EC=4.2.1.17 {ECO:0000313|EMBL:ELX13279.1};; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
Enoyl-CoA hydratase/isomerase n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PNT9_9BURK rbh
Enoyl-CoA hydratase/isomerase rbh
SCNpilot_cont_500_bf_scaffold_594_29
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26314..26865)
DNA (552bp) protein (184aa)
Transcriptional regulator MarR family n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PQZ1_9BURK
Transcriptional regulator MarR family {ECO:0000313|EMBL:ELX13278.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
MarR family transcriptional regulator
Displaying items 1-30 of 75 in total

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