ggKbase home page

SCNpilot_cont_500_bf_scaffold_1143

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1143_1
Aquitalea magnusonii, Aquitalea, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1607
DNA (1605bp) protein (535aa)
YD repeat protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NZX4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KJV25780.1}; TaxID=332411 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Aquitalea.;" source="Aquitalea magnusonii.;"
peptidoglycan-binding LysM
SCNpilot_cont_500_bf_scaffold_1143_2
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1604..4669
DNA (3066bp) protein (1022aa)
Rhs family protein n=1 Tax=Burkholderia cenocepacia H111 RepID=G7HQH9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KAK47825.1}; TaxID=1458357 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia jiangsuensis.;"
SCNpilot_cont_500_bf_scaffold_1143_3
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4798..5541
DNA (744bp) protein (248aa)
Uncharacterized protein {ECO:0000313|EMBL:KAK47825.1}; TaxID=1458357 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia jiangsuensis.;"
SCNpilot_cont_500_bf_scaffold_1143_4
Vibrio parahaemolyticus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5924..7273
DNA (1350bp) protein (450aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00036C2830
RHS repeat-associated core domain protein {ECO:0000313|EMBL:EQM46614.1}; TaxID=1238224 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio parahaemolyticus VPCR-2010.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1143_5
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7270..7701
DNA (432bp) protein (144aa)
UPI0003CFD294 related cluster n=1 Tax=unknown RepID=UPI0003CFD294
Uncharacterized protein {ECO:0000313|EMBL:ESZ22363.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1143_6
Saccharophagus degradans, Saccharophagus, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8719..9453
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Methylotenera sp. 1P/1 RepID=UPI00037E7AD7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD80665.1}; TaxID=203122 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Saccharophagus.;" source="Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024).;"
SCNpilot_cont_500_bf_scaffold_1143_7
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9548..10750)
DNA (1203bp) protein (401aa)
alcohol dehydrogenase; K00148 glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] rbh
Alcohol dehydrogenase GroES domain protein n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WMV0_VEREI rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_cont_500_bf_scaffold_1143_8
Pandoraea oxalativorans, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10818..11552)
DNA (735bp) protein (245aa)
Alpha/beta hydrolase fold n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WHL9_VEREI
Alpha/beta hydrolase {ECO:0000313|EMBL:AKC69076.1}; TaxID=573737 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea oxalativorans.;"
alpha/beta hydrolase fold protein
SCNpilot_cont_500_bf_scaffold_1143_9
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11549..12262)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003466045 rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AJE98450.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_1143_10
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12255..13013)
DNA (759bp) protein (253aa)
ABC transporter related n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WHM0_VEREI rbh
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein rbh
ABC transporter related {ECO:0000313|EMBL:ABM57127.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_cont_500_bf_scaffold_1143_11
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13010..13996)
DNA (987bp) protein (329aa)
Inner-membrane translocator n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WHM1_VEREI rbh
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein rbh
Inner-membrane translocator {ECO:0000313|EMBL:ABM57128.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_cont_500_bf_scaffold_1143_12
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13999..14868)
DNA (870bp) protein (290aa)
Inner-membrane translocator n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WHM2_VEREI rbh
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein rbh
Inner-membrane translocator {ECO:0000313|EMBL:ABM57129.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_cont_500_bf_scaffold_1143_13
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14933..16114)
DNA (1182bp) protein (394aa)
Extracellular ligand-binding receptor n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WHM3_VEREI rbh
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein rbh
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ABM57130.1}; Flags: Precursor;; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_cont_500_bf_scaffold_1143_14
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16334..16693)
DNA (360bp) protein (120aa)
protocatechuate degradation protein; K04100 protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8]
protocatechuate 3,4-dioxygenase subunit alpha n=1 Tax=Xanthomonas arboricola RepID=UPI00030CDE72
Protocatechuate 3,4-dioxygenase {ECO:0000313|EMBL:KCX00024.1}; TaxID=69929 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni.;"
SCNpilot_cont_500_bf_scaffold_1143_15
Xanthomonas gardneri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16704..17588)
DNA (885bp) protein (295aa)
Protocatechuate 4,5-dioxygenase beta subunit {ECO:0000313|EMBL:EGD20633.1}; EC=1.13.11.8 {ECO:0000313|EMBL:EGD20633.1};; TaxID=925777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas gardneri ATCC 19865.;"
Protocatechuate 4,5-dioxygenase beta subunit n=1 Tax=Xanthomonas gardneri ATCC 19865 RepID=F0C1H7_9XANT rbh
protocatechuate 4,5-dioxygenase subunit beta rbh
SCNpilot_cont_500_bf_scaffold_1143_16
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17813..18541
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0003813D3E
GntR family transcriptional regulator; K11475 GntR family transcriptional regulator, vanillate catabolism transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABM57137.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_cont_500_bf_scaffold_1143_17
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18557..19663)
DNA (1107bp) protein (369aa)
Uncharacterized conserved protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6STZ9_JANMA rbh
hypothetical protein rbh
Uncharacterized conserved protein {ECO:0000313|EMBL:ABR90432.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
SCNpilot_cont_500_bf_scaffold_1143_18
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19947..20654
DNA (708bp) protein (236aa)
Putative membrane protein n=1 Tax=Bordetella bronchiseptica (strain MO149) RepID=K0MWJ3_BORBM rbh
hypothetical protein rbh
Integral membrane protein, YjbE family {ECO:0000313|EMBL:KDD56670.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
SCNpilot_cont_500_bf_scaffold_1143_19
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20689..21600)
DNA (912bp) protein (304aa)
GNAT family acetyltransferase n=1 Tax=Ralstonia sp. PBA RepID=I9KT72_9RALS rbh
GNAT family acetyltransferase {ECO:0000313|EMBL:EIZ03430.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
enzyme-regulator fusion protein rbh
SCNpilot_cont_500_bf_scaffold_1143_20
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22074..23435
DNA (1362bp) protein (454aa)
Integrase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJZ5_9BURK rbh
phage integrase family protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_cont_500_bf_scaffold_1143_21
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23518..24093
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2TF00_BURPP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD18671.1}; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phytofirmans (strain DSM 17436 / PsJN).;"
SCNpilot_cont_500_bf_scaffold_1143_22
Burkholderia vietnamiensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24620..25333
DNA (714bp) protein (238aa)
Uncharacterized protein n=2 Tax=Burkholderia cepacia complex RepID=A4JM34_BURVG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABO57337.1}; TaxID=269482 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia vietnamiensis (strain G4 / LMG 22486) (Burkholderia; cepacia (strain R1808)).;"
SCNpilot_cont_500_bf_scaffold_1143_23
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25428..26435
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2TB06_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AJC79762.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1143_24
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26435..27052
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2KQK1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AJC79763.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1143_25
unknown

Not on your lists

27476..29110
DNA (1635bp) protein (545aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1143_26
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29165..29710)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. PBA RepID=I9BV14_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EIZ03566.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
SCNpilot_cont_500_bf_scaffold_1143_27
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30222..30659
DNA (438bp) protein (146aa)
Putative DNA repair protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IEU5_BORPD
DNA repair protein; K03630 DNA repair protein RadC
Putative DNA repair protein {ECO:0000313|EMBL:CAP44907.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
Displaying 27 items

View Taxonomy