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SCNpilot_cont_500_bf_scaffold_75

Search features with annotation key words

Displaying items 1-30 of 458 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_75_1
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

257..1627
DNA (1371bp) protein (457aa)
Beta-glucosidase {ECO:0000256|RuleBase:RU361175}; EC=3.2.1.21 {ECO:0000256|RuleBase:RU361175};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002D9A18E rbh
putative beta-glucosidase rbh
SCNpilot_cont_500_bf_scaffold_75_2
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1698..2636
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003156DDD rbh
Phosphofructokinase {ECO:0000256|PIRNR:PIRNR000535}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
putative carbohydrate kinase PfkB family rbh
SCNpilot_cont_500_bf_scaffold_75_3
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2620..3759)
DNA (1140bp) protein (380aa)
ABC transporter-like protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZZK8_9BRAD rbh
ABC transporter-like protein rbh
ABC transporter-like protein {ECO:0000313|EMBL:BAM91940.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_cont_500_bf_scaffold_75_4
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4154..5776)
DNA (1623bp) protein (541aa)
60 kDa chaperonin 5 n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=CH605_BRADU rbh
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
groEL; molecular chaperone GroEL rbh
SCNpilot_cont_500_bf_scaffold_75_5
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6287..7108
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036A0C92 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAL76851.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_500_bf_scaffold_75_6
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7305..9716)
DNA (2412bp) protein (804aa)
ppsA; phosphoenolpyruvate synthase (EC:2.7.9.2); K01007 pyruvate, water dikinase [EC:2.7.9.2] rbh
Phosphoenolpyruvate synthase {ECO:0000256|PIRNR:PIRNR000854}; Short=PEP synthase {ECO:0000256|PIRNR:PIRNR000854};; EC=2.7.9.2 {ECO:0000256|PIRNR:PIRNR000854};; Pyruvate, water dikinase {ECO:0000256|PIRNR:PIRNR000854}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
Phosphoenolpyruvate synthase n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89L93_BRADU rbh
SCNpilot_cont_500_bf_scaffold_75_7
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9906..10907)
DNA (1002bp) protein (334aa)
Glucokinase n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YLY0_9BRAD rbh
Glucokinase {ECO:0000313|EMBL:KJC53875.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
glucokinase rbh
SCNpilot_cont_500_bf_scaffold_75_8
unknown

Not on your lists

comp(10894..11097)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_75_9
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11196..11615)
DNA (420bp) protein (140aa)
Uncharacterized protein n=2 Tax=Rhizobium fredii RepID=G9ADS5_RHIFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL54785.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_cont_500_bf_scaffold_75_10
Deinococcus proteolyticus, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

12009..12953
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Deinococcus proteolyticus (strain ATCC 35074 / DSM 20540 / JCM 6276 / NBRC 101906 / NCIMB 13154 / VKM Ac-1939 / CCM 2703) RepID=F0RPQ4_DEIPM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY27360.1}; TaxID=693977 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus proteolyticus (strain ATCC 35074 / DSM 20540 / JCM 6276 /; NBRC 101906 / NCIMB 13154 / VKM Ac-1939 / CCM 2703).;"
SCNpilot_cont_500_bf_scaffold_75_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

13077..14273
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00036BCD52 rbh
Uncharacterized protein {ECO:0000313|EMBL:EEF61363.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_75_12
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14392..15147)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HHJ3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF84293.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_75_13
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15398..16000)
DNA (603bp) protein (201aa)
Blr7345 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89DU3_BRADU
hypothetical protein
Blr7345 protein {ECO:0000313|EMBL:BAC52610.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_cont_500_bf_scaffold_75_14
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16482..16901)
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036D0B48
Putative signal transduction protein with CBS domains {ECO:0000313|EMBL:AIQ92378.1}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_75_15
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17279..17815
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037EF380
Uncharacterized protein {ECO:0000313|EMBL:BAR62146.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
erythromycin esterase
SCNpilot_cont_500_bf_scaffold_75_16
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17836..18510
DNA (675bp) protein (225aa)
Phosphoribosyltransferase n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QRM1_METTR
phosphoribosyltransferase
Phosphoribosyltransferase {ECO:0000313|EMBL:CCJ08342.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_500_bf_scaffold_75_17
unknown

Not on your lists

comp(18528..18767)
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_75_18
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18924..19610)
DNA (687bp) protein (229aa)
CBS domain containing membrane protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A7R5_STAND
hypothetical protein
CBS domain containing membrane protein {ECO:0000313|EMBL:ADH88513.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_500_bf_scaffold_75_19
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19960..21684
DNA (1725bp) protein (575aa)
polX; DNA polymerase/3'-5' exonuclease PolX (EC:2.7.7.7 3.1.11.-) rbh
DNA polymerase beta family protein {ECO:0000313|EMBL:BAR62155.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
PHP domain-containing protein; K02347 DNA polymerase (family X) id=16822931 bin=RBG_16_Aminicenantes_63_16_plus species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM rbh
SCNpilot_cont_500_bf_scaffold_75_20
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22068..23090
DNA (1023bp) protein (341aa)
ribose-phosphate pyrophosphokinase; K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] rbh
Ribose-phosphate pyrophosphokinase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RFH9_PHEZH rbh
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:ACG77060.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_500_bf_scaffold_75_21
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23002..24132)
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A7R1_STAND rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADH88509.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_500_bf_scaffold_75_22
unknown

Not on your lists

24372..24773
DNA (402bp) protein (134aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_75_23
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24802..25365
DNA (564bp) protein (188aa)
Cold-shock DNA-binding domain protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IF06_BEII9
cold-shock DNA-binding domain-containing protein
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:ACB94197.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_500_bf_scaffold_75_24
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25626..26327
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000375EB12
putative ParB-like nuclease
Putative ParB-like nuclease {ECO:0000313|EMBL:ACB95807.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_500_bf_scaffold_75_25
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26281..27981
DNA (1701bp) protein (567aa)
Blr2848 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89RC4_BRADU rbh
Putative sulfate transport protein {ECO:0000313|EMBL:KGJ68387.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
sulfate transport protein rbh
SCNpilot_cont_500_bf_scaffold_75_26
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28764..29627
DNA (864bp) protein (288aa)
Inner-membrane translocator n=1 Tax=Afipia sp. 1NLS2 RepID=D6V750_9BRAD rbh
LIV-I protein H {ECO:0000313|EMBL:CEG09465.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_75_27
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29669..30649
DNA (981bp) protein (327aa)
Inner-membrane translocator n=1 Tax=Afipia sp. 1NLS2 RepID=D6V751_9BRAD rbh
Leucine/isoleucine/valine transporter permease subunit {ECO:0000313|EMBL:CEG09464.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
ABC transporter permease; K01998 branched-chain amino acid transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_75_28
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30646..31425
DNA (780bp) protein (260aa)
ABC transporter related protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V752_9BRAD rbh
Lipopolysaccharide export system ATP-binding protein LptB {ECO:0000313|EMBL:CEG09463.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
branched-chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_75_29
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31418..32116
DNA (699bp) protein (233aa)
ABC transporter related protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V753_9BRAD rbh
LIV-I protein F {ECO:0000313|EMBL:CEG09462.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_75_30
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32141..33418
DNA (1278bp) protein (426aa)
Extracellular ligand-binding receptor n=1 Tax=Afipia sp. 1NLS2 RepID=D6V754_9BRAD rbh
Aliphatic amidase expression-regulating protein {ECO:0000313|EMBL:CEG09461.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein rbh
Displaying items 1-30 of 458 in total

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