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SCNpilot_cont_500_bf_scaffold_399

Search features with annotation key words

Displaying items 1-30 of 142 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_399_1
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..480
DNA (480bp) protein (160aa)
RNA polymerase sigma factor RpoD n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QH44_9BRAD
rpoD2; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
SCNpilot_cont_500_bf_scaffold_399_2
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(558..791)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V305_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI52335.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_399_3
unknown

Not on your lists

959..1084
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_399_4
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1187..1804)
DNA (618bp) protein (206aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SPU9_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA05692.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_500_bf_scaffold_399_5
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2310..4283)
DNA (1974bp) protein (658aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM25 RepID=J2XSH8_9PSED
Type IV pilus biogenesis/stability protein PilW {ECO:0000313|EMBL:KFB69031.1}; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_399_6
unknown

Not on your lists

4874..5011
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_399_7
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5008..5313
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSZ9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ETR79128.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_cont_500_bf_scaffold_399_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5466..6284
DNA (819bp) protein (273aa)
Lytic murein transglycosylase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q131Q5_RHOPS rbh
lytic murein transglycosylase rbh
Lytic murein transglycosylase {ECO:0000313|EMBL:ABE41184.1}; Flags: Precursor;; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_500_bf_scaffold_399_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6521..7729
DNA (1209bp) protein (403aa)
Diguanylate cyclase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07JL4_RHOP5 rbh
diguanylate cyclase rbh
Diguanylate cyclase {ECO:0000313|EMBL:ABJ07870.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_500_bf_scaffold_399_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7792..8307
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QGC6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KIZ40204.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_399_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8319..8612)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QP73_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61974.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_399_12
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9020..9388)
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000314C041
Uncharacterized protein {ECO:0000313|EMBL:KJC59608.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_399_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9529..9942)
DNA (414bp) protein (138aa)
methionine sulfoxide reductase B; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
methionine sulfoxide reductase B n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B3BA3E
SCNpilot_cont_500_bf_scaffold_399_14
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9967..10686)
DNA (720bp) protein (240aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
peptide methionine sulfoxide reductase; K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] rbh
methionine sulfoxide reductase A n=1 Tax=Bradyrhizobium japonicum RepID=UPI000369E7DC rbh
SCNpilot_cont_500_bf_scaffold_399_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10985..11380)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQC5_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61572.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_399_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11517..12626)
DNA (1110bp) protein (370aa)
exodeoxyribonuclease V; K01144 exodeoxyribonuclease V [EC:3.1.11.5] rbh
Exodeoxyribonuclease V n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07T03_RHOP5 rbh
Exodeoxyribonuclease V {ECO:0000313|EMBL:ABJ04931.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_500_bf_scaffold_399_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12802..12975
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6NAB6_RHOPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAE26712.1}; Flags: Precursor;; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_cont_500_bf_scaffold_399_18
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12988..14373)
DNA (1386bp) protein (462aa)
ABC transporter permease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1ILF7_9BRAD rbh
ABC transporter permease {ECO:0000313|EMBL:ERF83469.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
two component, sigma54 specific, Fis family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_399_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14422..14772)
DNA (351bp) protein (117aa)
Flagellar motor switch FliN n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21AS2_RHOPB
flagellar motor switch protein; K02417 flagellar motor switch protein FliN/FliY
Flagellar motor switch FliN {ECO:0000313|EMBL:ABD86514.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_500_bf_scaffold_399_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14769..15407)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJX4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41099.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
fliH; flagellar assembly protein H; K02411 flagellar assembly protein FliH
SCNpilot_cont_500_bf_scaffold_399_21
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15407..16498)
DNA (1092bp) protein (364aa)
Flagellar motor switch protein FliG n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQC0_NITHX
fliG; flagellar motor switch protein G; K02410 flagellar motor switch protein FliG
Flagellar motor switch protein FliG {ECO:0000256|PIRNR:PIRNR003161}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_399_22
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16505..18079)
DNA (1575bp) protein (525aa)
flagellar M-ring protein FliF n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003660B84 rbh
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
fliF; flagellar MS-ring protein; K02409 flagellar M-ring protein FliF rbh
SCNpilot_cont_500_bf_scaffold_399_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18305..18580)
DNA (276bp) protein (92aa)
Uncharacterized protein n=25 Tax=Bradyrhizobiaceae RepID=A4Z085_BRASO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE41068.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_500_bf_scaffold_399_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18767..19471)
DNA (705bp) protein (235aa)
Flagellar hook capping protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q131Q6_RHOPS rbh
flagellar hook capping protein; K02389 flagellar basal-body rod modification protein FlgD
Flagellar hook capping protein {ECO:0000313|EMBL:ABE41183.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_500_bf_scaffold_399_25
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19482..21116)
DNA (1635bp) protein (545aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000367C73D rbh
Uncharacterized protein {ECO:0000313|EMBL:KJC59630.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
flagellar hook-length control protein
SCNpilot_cont_500_bf_scaffold_399_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21546..22745
DNA (1200bp) protein (400aa)
mnmA; tRNA-specific 2-thiouridylase MnmA; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] rbh
tRNA-specific 2-thiouridylase MnmA {ECO:0000255|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000255|HAMAP-Rule:MF_00144};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
tRNA-specific 2-thiouridylase MnmA n=2 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=MNMA_RHOP2 rbh
SCNpilot_cont_500_bf_scaffold_399_27
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22763..23401
DNA (639bp) protein (213aa)
phosphatidylethanolamine N-methyltransferase (EC:2.1.1.17); K00551 phosphatidylethanolamine N-methyltransferase [EC:2.1.1.17] rbh
Phosphatidyl-N-methylethanolamine N-methyltransferase / phosphatidylethanolamine N-methyltransferase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q131Q9_RHOPS rbh
SAM-dependent methlyltransferase {ECO:0000313|EMBL:KIZ33570.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_500_bf_scaffold_399_28
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23567..23821
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEN1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41107.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_399_trna_1
unknown

Not on your lists

23927..24000
DNA (74bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_399_29
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24460..25089)
DNA (630bp) protein (210aa)
ArsR family transcriptional regulator n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037370F7 rbh
Transcriptional regulator {ECO:0000313|EMBL:EIG57963.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
AsnC family transcriptional regulator
Displaying items 1-30 of 142 in total

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