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SCNpilot_cont_500_bf_scaffold_1355

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Displaying items 1-30 of 41 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1355_1
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..2528
DNA (2526bp) protein (842aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
carB; carbamoyl phosphate synthase large subunit (EC:6.3.5.5); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase large chain n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89DR2_BRADU
SCNpilot_cont_500_bf_scaffold_1355_2
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2727..3203
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H0I7_9BRAD
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
greA; transcription elongation factor GreA; K03624 transcription elongation factor GreA
SCNpilot_cont_500_bf_scaffold_1355_3
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3413..3799
DNA (387bp) protein (129aa)
Oxidoreductase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HFL0_9BRAD
LuxR family transcriptional regulator {ECO:0000313|EMBL:KJC44949.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein; K15977 putative oxidoreductase
SCNpilot_cont_500_bf_scaffold_1355_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3876..4403)
DNA (528bp) protein (176aa)
Transcriptional regulator, AsnC family n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IZY7_RHOP2
AsnC family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABD06223.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_500_bf_scaffold_1355_5
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4616..5581
DNA (966bp) protein (322aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
trxB; thioredoxin reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Thioredoxin reductase n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RT66_9BRAD
SCNpilot_cont_500_bf_scaffold_1355_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5584..6507
DNA (924bp) protein (308aa)
Transcriptional regulator, LysR family n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07JJ3_RHOP5 rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:KIZ39621.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_1355_7
unknown

Not on your lists

comp(6423..6617)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1355_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6914..7594)
DNA (681bp) protein (227aa)
Cobyrinic acid a,c-diamide synthase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13B51_RHOPS rbh
cobyrinic acid a,c-diamide synthase rbh
Cobyrinic acid a,c-diamide synthase {ECO:0000313|EMBL:ABE38688.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_500_bf_scaffold_1355_9
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7765..8073)
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SPT2_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA05709.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_500_bf_scaffold_1355_10
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8317..8670
DNA (354bp) protein (118aa)
Blr4850 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89KQ4_BRADU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAR62702.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
SCNpilot_cont_500_bf_scaffold_1355_11
unknown

Not on your lists

8718..8882
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1355_trna_1
unknown

Not on your lists

comp(8908..8987)
DNA (80bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1355_12
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9089..9523)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ERB2_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ38706.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_500_bf_scaffold_1355_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9859..10242)
DNA (384bp) protein (128aa)
phasin n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034DA711
phasin 2
Phasin 2 {ECO:0000313|EMBL:ABD89467.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_500_bf_scaffold_1355_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10572..13802
DNA (3231bp) protein (1077aa)
Two-component hybrid sensor and regulator n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D4V2_BRAJP rbh
Histidine kinase {ECO:0000313|EMBL:KIZ39652.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
two-component hybrid sensor and regulator rbh
SCNpilot_cont_500_bf_scaffold_1355_15
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13917..14942
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P349_9BRAD rbh
Extracellular solute-binding protein {ECO:0000313|EMBL:EJZ33768.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
extracellular solute-binding protein; K02012 iron(III) transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_1355_16
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15040..16686
DNA (1647bp) protein (549aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NXZ1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35192.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
binding-protein-dependent transport systems inner membrane component; K02011 iron(III) transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_1355_17
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16754..17041)
DNA (288bp) protein (96aa)
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IIC4_9BRAD
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B {ECO:0000313|EMBL:ERF82259.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
3-ketoacid-coenzyme A transferase subunit B
SCNpilot_cont_500_bf_scaffold_1355_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17415..18119)
DNA (705bp) protein (235aa)
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5); K01028 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] rbh
3-oxoacid CoA-transferase, subunit A {ECO:0000313|EMBL:ABE38671.1}; EC=2.8.3.5 {ECO:0000313|EMBL:ABE38671.1};; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
3-oxoacid CoA-transferase, subunit A n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13B68_RHOPS rbh
SCNpilot_cont_500_bf_scaffold_1355_19
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18405..20318
DNA (1914bp) protein (638aa)
cell envelope biogenesis protein AsmA n=1 Tax=Bradyrhizobium elkanii RepID=UPI000361AEB5 rbh
Cell envelope biogenesis protein AsmA {ECO:0000313|EMBL:KJC43769.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
AsmA; K07289 AsmA protein rbh
SCNpilot_cont_500_bf_scaffold_1355_20
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20337..21155)
DNA (819bp) protein (273aa)
ABC-type spermidine/putrescine transport system, permease component II n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2W7K8_9BRAD
ABC-type spermidine/putrescine transport system, permease component II {ECO:0000313|EMBL:EJN14762.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
ABC transporter permease; K11074 putrescine transport system permease protein
SCNpilot_cont_500_bf_scaffold_1355_21
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21152..22063)
DNA (912bp) protein (304aa)
putrescine/spermidine ABC transporter permease n=1 Tax=Bradyrhizobium japonicum RepID=UPI000378F0D3 rbh
ABC transporter permease; K11075 putrescine transport system permease protein rbh
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:KJC38518.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
SCNpilot_cont_500_bf_scaffold_1355_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22065..23216)
DNA (1152bp) protein (384aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ABC transporter ATP-binding protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034B7465 rbh
spermidine/putrescine ABC transporter ATP-binding subunit; K11076 putrescine transport system ATP-binding protein rbh
SCNpilot_cont_500_bf_scaffold_1355_23
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23375..26068)
DNA (2694bp) protein (898aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GXP4_9BRAD rbh
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:ERF82272.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1355_24
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26312..27415
DNA (1104bp) protein (368aa)
Peptide-methionine (R)-S-oxide reductase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HBX3_9BRAD
Peptide-methionine (R)-S-oxide reductase {ECO:0000313|EMBL:ERF82273.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
NAD binding site:FAD dependent oxidoreductase
SCNpilot_cont_500_bf_scaffold_1355_25
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27522..27707)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NUL2_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31135.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1355_26
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27936..28142
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034C654D
Uncharacterized protein {ECO:0000313|EMBL:EAQ34982.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1355_27
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28368..29039)
DNA (672bp) protein (224aa)
Diguanylate cyclase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J052_RHOP2
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:ABD06158.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_500_bf_scaffold_1355_28
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29167..29655
DNA (489bp) protein (163aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. L
phosphoribosylaminoimidazole carboxylase catalytic subunit; K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000315C978
SCNpilot_cont_500_bf_scaffold_1355_29
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29652..30761
DNA (1110bp) protein (370aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizo
purK; phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21); K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] rbh
Phosphoribosylaminoimidazole carboxylase, ATPase subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IF38_9BRAD rbh
Displaying items 1-30 of 41 in total

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