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SCNpilot_cont_500_bf_scaffold_108

Search features with annotation key words

Displaying items 1-30 of 903 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_108_1
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..1401)
DNA (1401bp) protein (467aa)
rng; ribonuclease G and E; K08300 ribonuclease E [EC:3.1.26.12]
ribonuclease G, partial n=1 Tax=Microbacterium sp. B19 RepID=UPI0003B4EC81 rbh
Ribonuclease G and E {ECO:0000313|EMBL:BAJ76315.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_108_2
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1835..2434
DNA (600bp) protein (200aa)
Predicted membrane protein n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NE60_MICTS rbh
hypothetical protein rbh
Predicted membrane protein {ECO:0000313|EMBL:BAJ76314.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_108_3
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2606..3022)
DNA (417bp) protein (139aa)
Nucleoside diphosphate kinase {ECO:0000256|RuleBase:RU004013}; EC=2.7.4.6 {ECO:0000256|RuleBase:RU004013};; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
ndk; nucleoside diphosphate kinase; K00940 nucleoside-diphosphate kinase [EC:2.7.4.6]
Nucleoside diphosphate kinase n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NE58_MICTS
SCNpilot_cont_500_bf_scaffold_108_4
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3026..3430)
DNA (405bp) protein (135aa)
allophanate hydrolase n=1 Tax=Microbacterium sp. B19 RepID=UPI000349BB78
Allophanate hydrolase {ECO:0000313|EMBL:KEP75902.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
allophanate hydrolase subunit 2
SCNpilot_cont_500_bf_scaffold_108_5
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3427..4779)
DNA (1353bp) protein (451aa)
folylpolyglutamate synthase; K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] rbh
Folylpolyglutamate synthase n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NE56_MICTS rbh
Folylpolyglutamate synthase {ECO:0000313|EMBL:BAJ76310.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_108_6
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4776..8156)
DNA (3381bp) protein (1127aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
ileS; isoleucyl-tRNA synthetase; K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5] rbh
Isoleucine--tRNA ligase n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NE55_MICTS rbh
SCNpilot_cont_500_bf_scaffold_108_7
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8512..9747
DNA (1236bp) protein (412aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI00035E3079 rbh
MFS transporter {ECO:0000313|EMBL:KHK98963.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
proline/betaine transporter
SCNpilot_cont_500_bf_scaffold_108_8
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9748..10404
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI00034CCF64 rbh
Uncharacterized protein {ECO:0000313|EMBL:KHK98261.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_108_9
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(10664..11494)
DNA (831bp) protein (277aa)
DNA helicase n=1 Tax=Agromyces italicus RepID=UPI0003B7860A
Superfamily I DNA and RNA helicase or helicase subunit protein (Modular protein) {ECO:0000313|EMBL:CDJ99859.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
superfamily I DNA and RNA helicase and helicase subunits
SCNpilot_cont_500_bf_scaffold_108_10
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


11790..13688
DNA (1899bp) protein (633aa)
valS; valyl-tRNA synthetase; K01873 valyl-tRNA synthetase [EC:6.1.1.9]
Valine--tRNA ligase {ECO:0000256|SAAS:SAAS00105779}; EC=6.1.1.9 {ECO:0000256|SAAS:SAAS00105779};; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
valyl-tRNA synthetase n=1 Tax=Microbacterium sp. B19 RepID=UPI00034BFC66
SCNpilot_cont_500_bf_scaffold_108_11
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13718..14317
DNA (600bp) protein (200aa)
valS; valyl-tRNA synthetase; K01873 valyl-tRNA synthetase [EC:6.1.1.9]
Valine--tRNA ligase {ECO:0000256|SAAS:SAAS00105779}; EC=6.1.1.9 {ECO:0000256|SAAS:SAAS00105779};; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
valyl-tRNA synthetase n=1 Tax=Microbacterium sp. B19 RepID=UPI00034BFC66
Suspect SCG annotation. See neighboring gene [SCNpilot_cont_500_bf_scaffold_108_10].
SCNpilot_cont_500_bf_scaffold_108_12
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14317..14565
DNA (249bp) protein (83aa)
Fe-S osidoreductase n=1 Tax=Microbacterium sp. B19 RepID=UPI00034A306D
Fe-S osidoreductase {ECO:0000313|EMBL:KEP75899.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
Fe-S oxidoreductase
SCNpilot_cont_500_bf_scaffold_108_13
unknown

Not on your lists

comp(14617..14820)
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI00034761FD
SCNpilot_cont_500_bf_scaffold_108_14
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14817..15410)
DNA (594bp) protein (198aa)
transcriptional regulator n=1 Tax=Microbacterium sp. B19 RepID=UPI00034DD72B rbh
transcriptional regulator rbh
Predicted transcriptional regulator {ECO:0000313|EMBL:BAJ76302.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_108_15
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15493..17544
DNA (2052bp) protein (684aa)
Zn-dependent oligopeptidase; K01284 peptidyl-dipeptidase Dcp [EC:3.4.15.5] rbh
peptidase M3 n=1 Tax=Microbacterium sp. B19 RepID=UPI00034C896C rbh
Zn-dependent oligopeptidase {ECO:0000313|EMBL:BAJ76301.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_108_16
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17557..18360)
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI0003492E71 rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EEP73071.1}; TaxID=219305 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_108_17
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18384..19652)
DNA (1269bp) protein (423aa)
ATP-dependent protease n=1 Tax=Microbacterium sp. B19 RepID=UPI00034A1B14 rbh
clpX; ATP-dependent protease Clp, ATPase subunit; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX rbh
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_108_18
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19893..20555)
DNA (663bp) protein (221aa)
clpP2; protease subunit of ATP-dependent Clp protease; K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] rbh
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Microbacterium sp. B19 RepID=UPI0003487C5E rbh
SCNpilot_cont_500_bf_scaffold_108_19
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20585..20977)
DNA (393bp) protein (131aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
clpP; protease subunit of ATP-dependent Clp protease; K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease ClpP n=1 Tax=Microbacterium sp. B19 RepID=UPI00034B38BD
SCNpilot_cont_500_bf_scaffold_108_20
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21178..21666)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI00034946A1
TPR repeat
FOG: TPR repeat {ECO:0000313|EMBL:BAJ76295.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_108_21
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21850..23307)
DNA (1458bp) protein (486aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
trigger factor n=1 Tax=Microbacterium sp. B19 RepID=UPI00034B332E rbh
tig; FKBP-type peptidyl-prolyl cis-trans isomerase; K03545 trigger factor rbh
SCNpilot_cont_500_bf_scaffold_108_trna_18
unknown

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comp(23381..23454)
DNA (74bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_108_trna_1
unknown

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23730..23800
DNA (71bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_108_22
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23812..24168)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NE39_MICTS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ76293.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_108_23
Corynebacterium callunae, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24314..25282
DNA (969bp) protein (323aa)
arsenic resistance protein n=1 Tax=Microbacterium sp. B19 RepID=UPI00034ADC0D rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG68032.1}; TaxID=1121353 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium callunae DSM 20147.;"
SCNpilot_cont_500_bf_scaffold_108_24
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25384..26973
DNA (1590bp) protein (530aa)
Glucan phosphorylase n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NE38_MICTS rbh
glucan phosphorylase rbh
Glucan phosphorylase {ECO:0000313|EMBL:BAJ76292.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_108_25
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27005..27544)
DNA (540bp) protein (180aa)
anhydrase n=1 Tax=Microbacterium sp. B19 RepID=UPI000347DFD5 rbh
carbonic anhydrase/acetyltransferase, isoleucine patch superfamily
Carbonic anhydrase/acetyltransferase, isoleucine patch superfamily {ECO:0000313|EMBL:BAJ76291.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_108_26
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27685..28170
DNA (486bp) protein (162aa)
DNA-binding protein n=1 Tax=Microbacterium sp. B19 RepID=UPI00034CB407
DNA-binding ferritin-like protein; K04047 starvation-inducible DNA-binding protein
DNA-binding ferritin-like protein {ECO:0000313|EMBL:BAJ76289.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_108_27
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28230..29726)
DNA (1497bp) protein (499aa)
metal-dependent hydrolase n=1 Tax=Microbacterium sp. B19 RepID=UPI00034A0DED rbh
metal-dependent hydrolase with the TIM-barrel fold; K07047 rbh
Predicted metal-dependent hydrolase with the TIM-barrel fold {ECO:0000313|EMBL:BAJ76287.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_108_28
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29723..30349)
DNA (627bp) protein (209aa)
transcriptional regulator n=1 Tax=Microbacterium sp. B19 RepID=UPI0003B79A6C rbh
transcriptional regulator; K07734 transcriptional regulator rbh
Transcriptional regulator {ECO:0000313|EMBL:BAJ76286.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
Displaying items 1-30 of 903 in total

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