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SCNpilot_cont_500_bf_scaffold_386

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_386_1
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1..1122
DNA (1122bp) protein (374aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
acnA; aconitase A; K01681 aconitate hydratase 1 [EC:4.2.1.3]
Aconitase A n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NEZ7_MICTS
SCNpilot_cont_500_bf_scaffold_386_2
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1119..1283
DNA (165bp) protein (55aa)
acnA; aconitase A; K01681 aconitate hydratase 1 [EC:4.2.1.3]
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
aconitate hydratase, partial n=1 Tax=Microbacterium sp. B19 RepID=UPI0003B3921D
SCNpilot_cont_500_bf_scaffold_386_3
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1449..3398
DNA (1950bp) protein (650aa)
dxs; deoxyxylulose-5-phosphate synthase; K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] rbh
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Microbacterium sp. B19 RepID=UPI0003458AD3 rbh
SCNpilot_cont_500_bf_scaffold_386_4
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3564..5702)
DNA (2139bp) protein (713aa)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Microbacterium sp. B19 RepID=UPI0003467946 rbh
fadB; 3-hydroxyacyl-CoA dehydrogenase rbh
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:BAJ76442.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_386_5
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5699..6907)
DNA (1209bp) protein (403aa)
atoB; acetyl-CoA acetyltransferase; K00632 acetyl-CoA acyltransferase [EC:2.3.1.16] rbh
acetyl-CoA acetyltransferase n=1 Tax=Microbacterium sp. B19 RepID=UPI0003456EDD rbh
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KEP75758.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
SCNpilot_cont_500_bf_scaffold_386_6
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6979..8175)
DNA (1197bp) protein (399aa)
ribonuclease D; K03684 ribonuclease D [EC:3.1.13.5] rbh
Ribonuclease D n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NF01_MICTS rbh
Ribonuclease D {ECO:0000313|EMBL:BAJ76444.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_386_7
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8168..8764)
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI0003450DA2 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAJ76445.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_386_8
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8784..9992
DNA (1209bp) protein (403aa)
alpha/beta hydrolase n=1 Tax=Microbacterium sp. B19 RepID=UPI00034BD361 rbh
Alpha/beta hydrolase {ECO:0000313|EMBL:KEP75760.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
hydrolase of the alpha/beta superfamily rbh
SCNpilot_cont_500_bf_scaffold_386_9
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9997..10437)
DNA (441bp) protein (147aa)
cysteine desufuration protein SufE n=1 Tax=Microbacterium sp. B19 RepID=UPI0003B3E98D
SufE protein probably; K02426 cysteine desulfuration protein SufE
SufE protein probably {ECO:0000313|EMBL:BAJ76448.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_386_10
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10472..11374)
DNA (903bp) protein (301aa)
thtR; rhodanese-related sulfurtransferase; K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] rbh
thiosulfate sulfurtransferase n=1 Tax=Microbacterium sp. B19 RepID=UPI0003451976 rbh
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_386_11
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11493..12530
DNA (1038bp) protein (346aa)
Predicted ATPase n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NFG8_MICTS rbh
ATPase {ECO:0000313|EMBL:KEP75763.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
ATPase; K06916 rbh
SCNpilot_cont_500_bf_scaffold_386_12
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12699..13970
DNA (1272bp) protein (424aa)
Ammonia permease n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NFG9_MICTS rbh
ammonia permease; K03320 ammonium transporter, Amt family rbh
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_386_13
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14067..14606
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI00034DB22B rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ76452.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_386_14
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14707..15060)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00037B271D
Uncharacterized protein {ECO:0000313|EMBL:AJW79400.1}; TaxID=33014 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. insidiosus.;"
SCNpilot_cont_500_bf_scaffold_386_trna_4
unknown

Not on your lists

comp(15145..15217)
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_386_trna_1
unknown

Not on your lists

15370..15442
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_386_trna_2
unknown

Not on your lists

15507..15577
DNA (71bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_386_trna_3
unknown

Not on your lists

15604..15675
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_386_15
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15804..16160)
DNA (357bp) protein (119aa)
alternative tryptophan synthase beta-subunit n=1 Tax=Microbacterium sp. B19 RepID=UPI00034504CF
Uncharacterized protein {ECO:0000313|EMBL:KEP75417.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
SCNpilot_cont_500_bf_scaffold_386_16
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16323..16736
DNA (414bp) protein (138aa)
pyridoxamine 5-phosphate oxidase n=1 Tax=Microbacterium sp. B19 RepID=UPI00034B4002
flavin-nucleotide-binding protein structurally; K07006
Predicted flavin-nucleotide-binding protein structurally {ECO:0000313|EMBL:BAJ76455.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_386_17
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16908..17291
DNA (384bp) protein (128aa)
ATP-dependent DNA ligase n=1 Tax=Microbacterium sp. B19 RepID=UPI000348B73A
transcription-repair coupling factor
Transcription-repair coupling factor {ECO:0000313|EMBL:BAJ76456.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_386_18
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17311..18459)
DNA (1149bp) protein (383aa)
arsenic transporter n=1 Tax=Microbacterium sp. B19 RepID=UPI00034C3920 rbh
Na+/H+ antiporter NhaD rbh
Arsenical pump membrane protein {ECO:0000256|RuleBase:RU004993}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_386_19
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18541..20550
DNA (2010bp) protein (670aa)
thrS; threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] rbh
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
threonyl-tRNA synthetase n=1 Tax=Microbacterium sp. B19 RepID=UPI0003471FB6 rbh
SCNpilot_cont_500_bf_scaffold_386_20
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20547..21113
DNA (567bp) protein (189aa)
HIT family hydrolase n=1 Tax=Microbacterium sp. B19 RepID=UPI00034714CB rbh
diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase rbh
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase {ECO:0000313|EMBL:BAJ76460.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_386_21
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21210..22061)
DNA (852bp) protein (284aa)
pyridoxal/pyridoxine/pyridoxamine kinase; K00868 pyridoxine kinase [EC:2.7.1.35] rbh
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
pyridoxamine kinase n=1 Tax=Microbacterium sp. B19 RepID=UPI000349F466 rbh
SCNpilot_cont_500_bf_scaffold_386_22
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22058..23398)
DNA (1341bp) protein (447aa)
transcriptional regulator n=1 Tax=Microbacterium sp. B19 RepID=UPI0003490AF9 rbh
transcriptional regulator rbh
Transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domain {ECO:0000313|EMBL:BAJ76463.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_386_23
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23494..24378
DNA (885bp) protein (295aa)
pyridoxine biosynthesis protein; K06215 pyridoxine biosynthesis protein [EC:4.-.-.-] rbh
Pyridoxal 5'-phosphate synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824}; Short=PLP synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824};; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01824};; Pdx1 {ECO:0000256|HAMAP-Rule:MF_01824}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
pyridoxal biosynthesis lyase n=1 Tax=Microbacterium sp. B19 RepID=UPI00034CF344 rbh
SCNpilot_cont_500_bf_scaffold_386_24
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24368..24988
DNA (621bp) protein (207aa)
glutamine amidotransferase; K08681 glutamine amidotransferase [EC:2.6.-.-] rbh
Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000256|HAMAP-Rule:MF_01615}; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01615};; Pdx2 {ECO:0000256|HAMAP-Rule:MF_01615}; Pyridoxal 5'-phosphate synthase glutaminase subunit {ECO:0000256|HAMAP-Rule:MF_01615}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
glutamine amidotransferase n=1 Tax=Microbacterium sp. B19 RepID=UPI000348A784 rbh
SCNpilot_cont_500_bf_scaffold_386_25
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24999..25757
DNA (759bp) protein (253aa)
Probable transcriptional regulatory protein MTES_3502 n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NFI4_MICTS rbh
hypothetical protein rbh
Probable transcriptional regulatory protein MTES_3502 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_cont_500_bf_scaffold_386_26
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25797..26411
DNA (615bp) protein (205aa)
holliday junction resolvasome, endonuclease subunit; K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] rbh
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
crossover junction endodeoxyribonuclease RuvC n=1 Tax=Microbacterium sp. B19 RepID=UPI0003B60FED rbh
Displaying items 1-30 of 65 in total

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