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SCNpilot_cont_500_bf_scaffold_280

Search features with annotation key words

Displaying items 1-30 of 360 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_280_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(43..660)
DNA (618bp) protein (206aa)
50S ribosomal protein L4 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B510EC rbh
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
rplD; 50S ribosomal protein L4
SCNpilot_cont_500_bf_scaffold_280_2
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(664..1368)
DNA (705bp) protein (235aa)
50S ribosomal protein L3 n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036528A5 rbh
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3
SCNpilot_cont_500_bf_scaffold_280_3
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1682..1894)
DNA (213bp) protein (71aa)
30S ribosomal protein S10 n=3 Tax=root RepID=F3X0K1_9SPHN
30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
SCNpilot_cont_500_bf_scaffold_280_4
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2085..3281)
DNA (1197bp) protein (399aa)
tuf; elongation factor Tu (EC:3.6.5.3); K02358 elongation factor Tu
elongation factor Tu n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037A29EC rbh
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_cont_500_bf_scaffold_280_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3427..5460)
DNA (2034bp) protein (678aa)
elongation factor G n=1 Tax=Sphingomonas melonis RepID=UPI00037184B1
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
fusA; translation elongation factor (GTPase); K02355 elongation factor G
SCNpilot_cont_500_bf_scaffold_280_6
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5527..5937)
DNA (411bp) protein (137aa)
30S ribosomal protein S7 n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036C41BF
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
SCNpilot_cont_500_bf_scaffold_280_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5982..6353)
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000364FCDF
hypothetical protein
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_500_bf_scaffold_280_8
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6580..7869)
DNA (1290bp) protein (430aa)
Xaa-Pro dipeptidase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B7B1D7 rbh
Putative amidohydrolase {ECO:0000313|EMBL:GAO37933.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
Xaa-Pro dipeptidase rbh
SCNpilot_cont_500_bf_scaffold_280_9
Burkholderia thailandensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7928..8395
DNA (468bp) protein (156aa)
Putative uncharacterized protein n=3 Tax=Burkholderia thailandensis RepID=Q2SY79_BURTA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC37660.1}; TaxID=271848 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 /; CIP 106301).;"
SCNpilot_cont_500_bf_scaffold_280_10
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8374..9720)
DNA (1347bp) protein (449aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI0002889F53 rbh
Putative membrane protein {ECO:0000313|EMBL:EZP54669.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_280_11
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9779..11179)
DNA (1401bp) protein (467aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692, ECO:0000313|EMBL:AJR25662.1};; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
pdhD; dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Dihydrolipoyl dehydrogenase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0I9L7_9SPHN
SCNpilot_cont_500_bf_scaffold_280_12
unknown

Not on your lists

comp(11179..11388)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000381D9E4
SCNpilot_cont_500_bf_scaffold_280_13
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11390..12637)
DNA (1248bp) protein (416aa)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
pdhC; pyruvate dehydrogenase E2 component (EC:2.3.1.12); K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
branched-chain alpha-keto acid dehydrogenase subunit E2 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B540D0
SCNpilot_cont_500_bf_scaffold_280_14
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12744..13196
DNA (453bp) protein (151aa)
universal stress protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003692372
Universal stress protein {ECO:0000313|EMBL:AIT08136.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
UspA domain-containing protein
SCNpilot_cont_500_bf_scaffold_280_15
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13229..14527
DNA (1299bp) protein (433aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035C6CCC rbh
Peptidase M28 {ECO:0000313|EMBL:KHA64333.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
peptidase M28
SCNpilot_cont_500_bf_scaffold_280_16
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14534..15202)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CAC63
Uncharacterized protein {ECO:0000313|EMBL:GAL99800.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_280_17
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15284..15766)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000381F83F
Sphingomonas taxi strain 30a NODE_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28000.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
GAF domain-containing protein; K07170 GAF domain-containing protein
SCNpilot_cont_500_bf_scaffold_280_18
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15793..16191)
DNA (399bp) protein (133aa)
peptide chain release factor I n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003629E41
Peptide chain release factor 1 {ECO:0000313|EMBL:KHA64335.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein; K15034 ribosome-associated protein
SCNpilot_cont_500_bf_scaffold_280_19
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16175..16834)
DNA (660bp) protein (220aa)
Pseudouridine synthase {ECO:0000313|EMBL:EZP54652.1}; EC=5.4.99.- {ECO:0000313|EMBL:EZP54652.1};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
pseudouridine synthase; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036140D4 rbh
SCNpilot_cont_500_bf_scaffold_280_20
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16880..17653
DNA (774bp) protein (258aa)
hypothetical protein n=2 Tax=Sphingomonas melonis RepID=UPI00037466FA
D-alanyl-D-alanine carboxypeptidase family protein {ECO:0000313|EMBL:EZP54651.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
D-alanyl-D-alanine carboxypeptidase
SCNpilot_cont_500_bf_scaffold_280_21
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17638..17934)
DNA (297bp) protein (99aa)
Extradiol ring-cleavage dioxygenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W649_9SPHN
Extradiol ring-cleavage dioxygenase III subunit B {ECO:0000313|EMBL:KGB54939.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
extradiol ring-cleavage dioxygenase
SCNpilot_cont_500_bf_scaffold_280_22
unknown

Not on your lists

comp(17931..18509)
DNA (579bp) protein (193aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_280_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18531..19133)
DNA (603bp) protein (201aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138};; NAD(P)H:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01017}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
NAD(P)H quinone oxidoreductase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CB08C rbh
wrbA; TrpR binding protein WrbA; K03809 Trp repressor binding protein
SCNpilot_cont_500_bf_scaffold_280_24
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19201..19926)
DNA (726bp) protein (242aa)
pirin n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036339AC rbh
Putative pirin-related protein {ECO:0000313|EMBL:GAM00273.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
pirin-related protein; K06911
SCNpilot_cont_500_bf_scaffold_280_25
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20023..20910
DNA (888bp) protein (296aa)
LysR family transcriptional regulator n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036F1540 rbh
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:GAM00272.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
LysR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_280_26
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20919..21605
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000371055D
PAP2 superfamily protein {ECO:0000313|EMBL:EZP49903.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
PA-phosphatase-like phosphoesterase
SCNpilot_cont_500_bf_scaffold_280_27
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21736..22560)
DNA (825bp) protein (275aa)
citryl-CoA lyase; K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000369996F rbh
DNA, contig: SP618 {ECO:0000313|EMBL:GAN13460.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_cont_500_bf_scaffold_280_28
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22557..23555)
DNA (999bp) protein (333aa)
UDP-glucose 4-epimerase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037471D8 rbh
GalE protein {ECO:0000313|EMBL:GAN13459.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
UDP-galactose 4-epimerase
SCNpilot_cont_500_bf_scaffold_280_29
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23619..24155
DNA (537bp) protein (179aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
msrA; peptide methionine sulfoxide reductase (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
methionine sulfoxide reductase A n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B54122 rbh
SCNpilot_cont_500_bf_scaffold_280_30
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24170..24718)
DNA (549bp) protein (183aa)
Acetyltransferase protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z611_9SPHN
Putative acetyltransferase {ECO:0000313|EMBL:GAO40504.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
putative GCN5-related N-acetyltransferase
Displaying items 1-30 of 360 in total

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