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SCNpilot_cont_500_bf_scaffold_500

Search features with annotation key words

Displaying items 1-30 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_500_1
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..241)
DNA (240bp) protein (80aa)
Acetaldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042164}; EC=1.2.1.10 {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042125};; Acetaldehyde dehydrogenase [acetylating] {ECO:0000256|HAMAP-Rule:MF_01657}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
acetaldehyde dehydrogenase (EC:1.2.1.10); K04073 acetaldehyde dehydrogenase [EC:1.2.1.10]
Acetaldehyde dehydrogenase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IP17_9SPHN
SCNpilot_cont_500_bf_scaffold_500_2
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(253..1032)
DNA (780bp) protein (260aa)
4-oxalocrotonate decarboxylase {ECO:0000313|EMBL:KGB56283.1}; EC=4.1.1.77 {ECO:0000313|EMBL:KGB56283.1};; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
Hydratase/decarboxylase n=2 Tax=Sphingomonas aromaticivorans RepID=A4XDT8_NOVAD rbh
hydratase/decarboxylase rbh
SCNpilot_cont_500_bf_scaffold_500_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1035..2513)
DNA (1479bp) protein (493aa)
nbaE; 2-aminomuconate 6-semialdehyde dehydrogenase; K10217 aminomuconate-semialdehyde dehydrogenase [EC:1.2.1.32]
Aldehyde dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNE7_9SPHN rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:ENY79869.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_cont_500_bf_scaffold_500_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2588..3409)
DNA (822bp) protein (274aa)
Alpha/beta hydrolase fold protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W820_9SPHN rbh
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ENY79868.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hydrolase
SCNpilot_cont_500_bf_scaffold_500_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3409..4158)
DNA (750bp) protein (250aa)
ABC transporter n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VX59_9SPHN rbh
ABC transporter {ECO:0000313|EMBL:ENY79867.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_500_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4155..4901)
DNA (747bp) protein (249aa)
Binding-protein-dependent transport system inner membrane protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8U0_9SPHN rbh
Binding-protein-dependent transport system inner membrane protein {ECO:0000313|EMBL:ENY79866.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit; K02050 NitT/TauT family transport system permease protein
SCNpilot_cont_500_bf_scaffold_500_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4898..5461)
DNA (564bp) protein (188aa)
glyoxalase/bleomycin resistance protein/dioxygenase (EC:1.13.11.2); K00446 catechol 2,3-dioxygenase [EC:1.13.11.2]
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UN36_9SPHN rbh
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ENY79865.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_cont_500_bf_scaffold_500_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5458..6492)
DNA (1035bp) protein (345aa)
ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNE4_9SPHN rbh
ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit {ECO:0000313|EMBL:ENY79864.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
NMT1/THI5 like domain-containing protein; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_500_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6489..7388)
DNA (900bp) protein (300aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
5-carboxymethyl-2-hydroxymuconate delta-isomerase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W817_9SPHN rbh
5-carboxymethyl-2-hydroxymuconate delta-isomerase {ECO:0000313|EMBL:ENY79863.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_cont_500_bf_scaffold_500_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7570..8370
DNA (801bp) protein (267aa)
Probable L-aspartate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01265}; EC=1.4.1.21 {ECO:0000256|HAMAP-Rule:MF_01265};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
putative L-aspartate dehydrogenase; K06989 aspartate dehydrogenase [EC:1.4.1.21]
Probable L-aspartate dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8T6_9SPHN rbh
SCNpilot_cont_500_bf_scaffold_500_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8382..8828
DNA (447bp) protein (149aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UN32_9SPHN
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ENY79860.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_cont_500_bf_scaffold_500_12
unknown

Not on your lists

comp(8901..9041)
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_500_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9224..10234)
DNA (1011bp) protein (337aa)
aminocarboxymuconate-semialdehyde decarboxylase (EC:4.1.1.45); K03392 aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45]
Amidohydrolase 2 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNG7_9SPHN rbh
Amidohydrolase 2 {ECO:0000313|EMBL:ENY79889.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_cont_500_bf_scaffold_500_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10377..11336
DNA (960bp) protein (320aa)
LysR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W839_9SPHN rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:ENY79888.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
LysR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_500_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11316..12725)
DNA (1410bp) protein (470aa)
Amino acid permease-associated protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VX75_9SPHN rbh
Amino acid permease-associated protein {ECO:0000313|EMBL:ENY79887.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
amino acid permease-associated protein rbh
SCNpilot_cont_500_bf_scaffold_500_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12722..13975)
DNA (1254bp) protein (418aa)
Kynureninase {ECO:0000256|HAMAP-Rule:MF_01970, ECO:0000256|PIRNR:PIRNR038800}; EC=3.7.1.3 {ECO:0000256|HAMAP-Rule:MF_01970, ECO:0000256|PIRNR:PIRNR038800};; L-kynurenine hydrolase {ECO:0000256|HAMAP-Rule:MF_01970}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K01556 kynureninase [EC:3.7.1.3]
Kynureninase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8W1_9SPHN
SCNpilot_cont_500_bf_scaffold_500_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13965..15404)
DNA (1440bp) protein (480aa)
aldehyde dehydrogenase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248863A rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:ENY79885.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
aldehyde dehydrogenase rbh
SCNpilot_cont_500_bf_scaffold_500_18
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15401..17026)
DNA (1626bp) protein (542aa)
alsS; acetolactate synthase; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
acetolactate synthase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248863B rbh
Acetolactate synthase {ECO:0000313|EMBL:ENY79884.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_cont_500_bf_scaffold_500_19
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17230..18090
DNA (861bp) protein (287aa)
Ku family containing protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036C7DD9 rbh
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
Ku family containing protein; K10979 DNA end-binding protein Ku
SCNpilot_cont_500_bf_scaffold_500_20
Sphingomonas sp. BHC-A, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18092..20533
DNA (2442bp) protein (814aa)
lig; ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1]
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036874CA rbh
ATP-dependent DNA ligase {ECO:0000313|EMBL:KEY98140.1}; TaxID=322611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. BHC-A.;"
SCNpilot_cont_500_bf_scaffold_500_21
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20608..21879
DNA (1272bp) protein (424aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI00028845D5
Uncharacterized protein {ECO:0000313|EMBL:EZP51184.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_500_22
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21879..22859
DNA (981bp) protein (327aa)
methyltransferase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000288322B
Uncharacterized protein {ECO:0000313|EMBL:GAM00374.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_500_23
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22863..24395)
DNA (1533bp) protein (511aa)
Flavin-containing monooxygenase FMO n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WE35_9SPHN rbh
Flavin-containing monooxygenase FMO {ECO:0000313|EMBL:ENY82013.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
flavin-containing monooxygenase FMO rbh
SCNpilot_cont_500_bf_scaffold_500_24
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24558..25610
DNA (1053bp) protein (351aa)
Putative AraC family transcriptional regulator n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A7E7_9SPHN
Putative AraC family transcriptional regulator {ECO:0000313|EMBL:GAD50678.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
AraC family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_500_25
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25746..26510
DNA (765bp) protein (255aa)
short-chain dehydrogenase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248856A
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:KGB56757.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_500_bf_scaffold_500_26
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26553..27722)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SLA0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KGB56755.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_500_27
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27816..28904)
DNA (1089bp) protein (363aa)
LuxR family transcriptional regulator n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488EC9
Regulatory protein LuxR {ECO:0000313|EMBL:KGB56754.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
regulatory protein LuxR rbh
SCNpilot_cont_500_bf_scaffold_500_28
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28954..29859
DNA (906bp) protein (302aa)
alpha/beta hydrolase domain-containing protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488ECA rbh
alpha/beta hydrolase domain-containing protein rbh
Alpha/beta hydrolase domain-containing protein {ECO:0000313|EMBL:AGH51356.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_500_bf_scaffold_500_29
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29882..30658)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium IMCC14465 RepID=J9DE23_9PROT rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:KGB56752.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_cont_500_bf_scaffold_500_30
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30797..31585
DNA (789bp) protein (263aa)
3-alpha-hydroxysteroid dehydrogenase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI00024885B2
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:KGB56750.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
short-chain dehydrogenase/reductase SDR
Displaying items 1-30 of 78 in total

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