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SCNpilot_cont_500_bf_scaffold_618

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Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_618_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

320..2737
DNA (2418bp) protein (806aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035F76A4 rbh
Sphingomonas taxi strain 30a NODE_44, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27144.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
TonB-dependent receptor
SCNpilot_cont_500_bf_scaffold_618_2
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2792..4138)
DNA (1347bp) protein (449aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Integral membrane sensor signal transduction histidine kinase n=2 Tax=Sphingomonas wittichii RepID=A5VAI9_SPHWW rbh
integral membrane sensor signal transduction histidine kinase rbh
SCNpilot_cont_500_bf_scaffold_618_3
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4141..4818)
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000372CD53
Response regulator {ECO:0000313|EMBL:EZP55020.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
two component transcriptional regulator
SCNpilot_cont_500_bf_scaffold_618_4
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4934..6166
DNA (1233bp) protein (411aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SB73_9SPHN rbh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase rbh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:AGH47917.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_500_bf_scaffold_618_5
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6185..7291
DNA (1107bp) protein (369aa)
adhC; alcohol dehydrogenase class III (EC:1.1.1.1 1.1.1.284); K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
alcohol dehydrogenase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B71102 rbh
SCNpilot_cont_500_bf_scaffold_618_6
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7291..8127
DNA (837bp) protein (279aa)
putative esterase; K01070 S-formylglutathione hydrolase [EC:3.1.2.12] rbh
S-formylglutathione hydrolase n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CQ00_SPHYA rbh
S-formylglutathione hydrolase {ECO:0000313|EMBL:KFD29441.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_cont_500_bf_scaffold_618_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8143..9108)
DNA (966bp) protein (322aa)
Cell Wall Hydrolase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZZ4_9SPHN
Cell wall hydrolase {ECO:0000313|EMBL:AIT06875.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
sleB; spore cortex-lytic protein
SCNpilot_cont_500_bf_scaffold_618_8
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9242..10513
DNA (1272bp) protein (424aa)
amino acid permease n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B39950
Phospholipid binding protein {ECO:0000313|EMBL:KHS46707.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
phospholipid binding protein
SCNpilot_cont_500_bf_scaffold_618_9
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10489..11151)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YGB2_MOBAS
Uncharacterized protein {ECO:0000313|EMBL:EAS49313.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_618_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11153..12763)
DNA (1611bp) protein (537aa)
FAD-dependent oxidoreductase n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9332 rbh
Beta-carotene ketolase {ECO:0000313|EMBL:GAO53871.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
FAD dependent oxidoreductase rbh
SCNpilot_cont_500_bf_scaffold_618_11
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12795..13967)
DNA (1173bp) protein (391aa)
2Fe-2S ferredoxin n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B42862 rbh
Rieske (2Fe-2S) protein rbh
Rieske (2Fe-2S) protein {ECO:0000313|EMBL:ABD26112.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_618_12
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14018..14620
DNA (603bp) protein (201aa)
Transcriptional regulator, TetR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7R2_NOVAD
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABD26111.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_618_13
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14673..16376
DNA (1704bp) protein (568aa)
copper-binding protein n=1 Tax=Sphingomonas melonis RepID=UPI0003693718
Copper-binding protein {ECO:0000313|EMBL:AIT07934.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
copper-resistance protein CopA
SCNpilot_cont_500_bf_scaffold_618_14
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16373..17416
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003740963 rbh
Copper resistance B {ECO:0000313|EMBL:KEZ16645.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
copper resistance B; K07233 copper resistance protein B
SCNpilot_cont_500_bf_scaffold_618_15
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17462..19942)
DNA (2481bp) protein (827aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
DNA gyrase subunit B n=1 Tax=Sphingomonas melonis RepID=UPI00036841E7
gyrB; DNA gyrase subunit B
SCNpilot_cont_500_bf_scaffold_618_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19996..20412
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W797_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95338.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_618_17
RBG_13_Deltaproteobacteria_58_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20600..21247
DNA (648bp) protein (216aa)
VPEP domain-containing protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489C90
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_58_19_curated
SCNpilot_cont_500_bf_scaffold_618_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21315..22358)
DNA (1044bp) protein (348aa)
DNA repair protein RecF n=1 Tax=Sphingomonas melonis RepID=UPI000360615F
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
recF; recombination protein F
SCNpilot_cont_500_bf_scaffold_618_19
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22488..23294)
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035F5B49 rbh
Ubiquinone biosynthesis protein {ECO:0000313|EMBL:KHA63223.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_618_20
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23371..24366)
DNA (996bp) protein (332aa)
aldo/keto reductase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CD4F4 rbh
Aldo/keto reductase {ECO:0000313|EMBL:KHA63362.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
aldo/keto reductase
SCNpilot_cont_500_bf_scaffold_618_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24363..25631)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003708CDB
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:AJP70855.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative sodium/dicarboxylate symporter
SCNpilot_cont_500_bf_scaffold_618_22
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25714..27066
DNA (1353bp) protein (451aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
phosphoglucosamine mutase (EC:5.4.2.10); K03431 phosphoglucosamine mutase [EC:5.4.2.10]
phosphoglucosamine mutase n=1 Tax=Sphingomonas melonis RepID=UPI0003717F78 rbh
SCNpilot_cont_500_bf_scaffold_618_23
unknown

Not on your lists

27289..28041
DNA (753bp) protein (251aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_618_24
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28198..29469)
DNA (1272bp) protein (424aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037DB1A4
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:ABQ68474.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_500_bf_scaffold_618_25
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29508..29732
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI00026304FF
Uncharacterized protein {ECO:0000313|EMBL:GAO39018.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein; K09984 hypothetical protein
SCNpilot_cont_500_bf_scaffold_618_26
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29738..30877
DNA (1140bp) protein (380aa)
thiD; phosphomethylpyrimidine kinase; K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] rbh
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:BAK66938.1}; EC=2.7.4.7 {ECO:0000313|EMBL:BAK66938.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
phosphomethylpyrimidine kinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B38F65 rbh
SCNpilot_cont_500_bf_scaffold_618_27
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30865..31473
DNA (609bp) protein (203aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
ribonuclease HII n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000372BAC5 rbh
ribonuclease H
SCNpilot_cont_500_bf_scaffold_618_28
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31751..32875
DNA (1125bp) protein (375aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
modification methylase; K13581 modification methylase [EC:2.1.1.72] rbh
modification methylase n=1 Tax=Sphingomonas melonis RepID=UPI000362299A rbh
SCNpilot_cont_500_bf_scaffold_618_29
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32884..33930
DNA (1047bp) protein (349aa)
folP; dihydropteroate synthase (EC:2.5.1.15); K00796 dihydropteroate synthase [EC:2.5.1.15] rbh
dihydropteroate synthase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B66B55 rbh
Dihydropteroate synthase {ECO:0000313|EMBL:AIT07154.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_500_bf_scaffold_618_30
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33956..34651
DNA (696bp) protein (232aa)
Haloacid dehalogenase-like hydrolase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZZ3_9SPHN rbh
DNA, contig: SP609 {ECO:0000313|EMBL:GAN12403.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hydrolase; K07025 putative hydrolase of the HAD superfamily
Displaying items 1-30 of 38 in total

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