ggKbase home page

SCNpilot_cont_500_bf_scaffold_1082

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1082_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..232)
DNA (231bp) protein (77aa)
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas melonis RepID=UPI0003828941
Sphingomonas taxi strain 30a NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29666.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
acyl-CoA dehydrogenase domain-containing protein
SCNpilot_cont_500_bf_scaffold_1082_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(378..896)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DCAD8F
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67754.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_500_bf_scaffold_1082_3
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1033..1386)
DNA (354bp) protein (118aa)
Protein kinase C-like superfamily protein n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H5P8_CAUCN
protein kinase C-like superfamily protein
Uncharacterized protein {ECO:0000313|EMBL:AAK23415.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_cont_500_bf_scaffold_1082_4
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1383..2375)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDE1_PHEZH rbh
hypothetical protein; K06979 rbh
Uncharacterized protein {ECO:0000313|EMBL:ACG78331.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_500_bf_scaffold_1082_5
uncultured proteobacterium, Proteobacteria, Bacteria

Not on your lists

2462..3835
DNA (1374bp) protein (458aa)
Acyl-CoA dehydrogenase n=1 Tax=uncultured proteobacterium RepID=R4MZJ6_9PROT rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AGL33521.1}; TaxID=153809 species="Bacteria; Proteobacteria; environmental samples.;" source="uncultured proteobacterium.;"
acyl-CoA dehydrogenase
SCNpilot_cont_500_bf_scaffold_1082_6
Hyphomonas jannaschiana, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3920..4915
DNA (996bp) protein (332aa)
nitropropane dioxygenase/trans-enoyl-CoA reductase family; K00459 nitronate monooxygenase [EC:1.13.12.16] rbh
Nitropropane dioxygenase/trans-enoyl-CoA reductase family n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H2N2_CAUCN rbh
Nitropropane dioxygenase/trans-enoyl-CoA reductase family protein {ECO:0000313|EMBL:KCZ83781.1}; TaxID=1280952 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas jannaschiana VP2.;"
SCNpilot_cont_500_bf_scaffold_1082_7
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4961..5410)
DNA (450bp) protein (150aa)
tRNA/rRNA methyltransferase SpoU; K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037C4096
SCNpilot_cont_500_bf_scaffold_1082_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5616..6200
DNA (585bp) protein (195aa)
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Sphingomonas sp. S17 RepID=F3X3F7_9SPHN rbh
ubiquinol-cytochrome c reductase iron-sulfur subunit
SCNpilot_cont_500_bf_scaffold_1082_9
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6212..7441
DNA (1230bp) protein (410aa)
cytochrome B n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037171C6 rbh
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
cytochrome b/b6-like protein; K00412 ubiquinol-cytochrome c reductase cytochrome b subunit
SCNpilot_cont_500_bf_scaffold_1082_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7466..8308
DNA (843bp) protein (281aa)
cytochrome C n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037DCDCD
Cytochrome C {ECO:0000313|EMBL:AIT06485.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
cytochrome c1
SCNpilot_cont_500_bf_scaffold_1082_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8437..8967
DNA (531bp) protein (177aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
adenine phosphoribosyltransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B58715
adenine phosphoribosyltransferase
SCNpilot_cont_500_bf_scaffold_1082_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9169..9570
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00038231B2
Sphingomonas taxi strain 30a NODE_25, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28124.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1082_13
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9618..10316)
DNA (699bp) protein (233aa)
Circadian clock protein KaiC central subunit n=2 Tax=Rhizobium meliloti RepID=K0P0N9_RHIML
DNA helicase {ECO:0000313|EMBL:KHJ53237.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
circadian clock protein KaiC central subunit
SCNpilot_cont_500_bf_scaffold_1082_14
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10490..10945)
DNA (456bp) protein (152aa)
MaoC family dehydratase n=1 Tax=Sphingomonas melonis RepID=UPI000368270F
Sphingomonas taxi strain 30a NODE_25, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28123.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
MaoC-like dehydratase
SCNpilot_cont_500_bf_scaffold_1082_15
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10960..12273)
DNA (1314bp) protein (438aa)
nucleotide pyrophosphatase family protein (EC:3.6.1.9)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037FADCA rbh
Phosphodiesterase {ECO:0000313|EMBL:AIT06481.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_500_bf_scaffold_1082_16
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(12335..13081)
DNA (747bp) protein (249aa)
membrane protein n=1 Tax=Sphingomonas melonis RepID=UPI00036D1C93
Membrane protein {ECO:0000313|EMBL:KIJ72449.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
glutaredoxin rbh
SCNpilot_cont_500_bf_scaffold_1082_17
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13124..13525
DNA (402bp) protein (134aa)
MerR family transcriptional regulator n=1 Tax=Sphingomonas elodea RepID=UPI0002631AD8
MerR family transcriptional regulator {ECO:0000313|EMBL:KFG91200.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
MerR family transcriptional regulator; K08365 MerR family transcriptional regulator, mercuric resistance operon regulatory protein
SCNpilot_cont_500_bf_scaffold_1082_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13544..14644)
DNA (1101bp) protein (367aa)
GTP-binding protein YchF n=1 Tax=Sphingomonas melonis RepID=UPI00037D825B
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
GTP-binding protein YchF
SCNpilot_cont_500_bf_scaffold_1082_19
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14727..16454)
DNA (1728bp) protein (576aa)
small-conductance mechanosensitive channel n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B71E5F
Uncharacterized protein {ECO:0000313|EMBL:AHE56866.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1082_20
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16555..17136)
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036D7104
hypothetical protein
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_cont_500_bf_scaffold_1082_21
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17138..17707)
DNA (570bp) protein (190aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] rbh
Peptidyl-tRNA hydrolase n=1 Tax=Sphingomonas sp. S17 RepID=F3X312_9SPHN rbh
SCNpilot_cont_500_bf_scaffold_1082_22
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17791..18408)
DNA (618bp) protein (206aa)
50S ribosomal protein L25 n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000375225E
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
50S ribosomal protein L25/general stress protein Ctc
SCNpilot_cont_500_bf_scaffold_1082_23
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18534..19424)
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036A7649
Putative GumN-family protein {ECO:0000313|EMBL:GAM00185.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
GumN protein; K09973 hypothetical protein
SCNpilot_cont_500_bf_scaffold_1082_24
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19511..19882
DNA (372bp) protein (124aa)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
glyQ; glycyl-tRNA synthetase subunit alpha; K01878 glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
glycyl-tRNA synthetase subunit alpha n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6F161
SCNpilot_cont_500_bf_scaffold_1082_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19884..20363
DNA (480bp) protein (160aa)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
glyQ; glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14); K01878 glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
glycyl-tRNA synthetase subunit alpha n=1 Tax=Sphingomonas elodea RepID=UPI0002630CD9
SCNpilot_cont_500_bf_scaffold_1082_26
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20360..22414
DNA (2055bp) protein (685aa)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
glycine--tRNA ligase (EC:6.1.1.14); K01879 glycyl-tRNA synthetase beta chain [EC:6.1.1.14] rbh
glycyl-tRNA synthetase subunit beta n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B2FD27 rbh
SCNpilot_cont_500_bf_scaffold_1082_27
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22477..23628
DNA (1152bp) protein (384aa)
Pyruvate phosphate dikinase {ECO:0000313|EMBL:AIT06752.1}; EC=2.7.9.1 {ECO:0000313|EMBL:AIT06752.1};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
pyruvate phosphate dikinase (EC:2.7.9.1)
pyruvate phosphate dikinase n=1 Tax=Sphingomonas melonis RepID=UPI00037B529D
SCNpilot_cont_500_bf_scaffold_1082_28
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23583..25073
DNA (1491bp) protein (497aa)
pyruvate phosphate dikinase (EC:2.7.9.1)
pyruvate phosphate dikinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B315BB
PpdK protein {ECO:0000313|EMBL:GAN12175.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_cont_500_bf_scaffold_1082_29
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25084..25653
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC3E2
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_cont_500_bf_scaffold_1082_30
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25650..26180
DNA (531bp) protein (177aa)
Integral membrane protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USV3_9SPHN
Integral membrane protein {ECO:0000313|EMBL:ENY81404.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
integral membrane protein
Displaying items 1-30 of 59 in total

View Taxonomy