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SCNpilot_cont_500_bf_scaffold_3468

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3468_1
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..685)
DNA (684bp) protein (228aa)
Conjugal transfer protein TrbF n=1 Tax=Sphingomonas sp. LH128 RepID=J8W3W3_9SPHN rbh
Conjugal transfer protein TrbF {ECO:0000313|EMBL:EJU15033.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5 rbh
SCNpilot_cont_500_bf_scaffold_3468_2
bacterium YEK0313, Bacteria

Not on your lists

comp(685..2040)
DNA (1356bp) protein (452aa)
conjugal transfer protein TrbL n=1 Tax=Hoeflea sp. 108 RepID=UPI00037834B4 rbh
TrbL/VirB6 plasmid conjugal transfer protein {ECO:0000313|EMBL:CEJ11236.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
trbL; conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL rbh
SCNpilot_cont_500_bf_scaffold_3468_3
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2045..2434)
DNA (390bp) protein (130aa)
Conjugal transfer protein TrbK n=1 Tax=Sphingomonas sp. LH128 RepID=J8W5P6_9SPHN
Conjugal transfer protein TrbK {ECO:0000313|EMBL:KEQ52090.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
trbK; conjugal transfer protein TrbK
SCNpilot_cont_500_bf_scaffold_3468_4
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2445..3221)
DNA (777bp) protein (259aa)
conjugal transfer protein TrbJ n=1 Tax=Hoeflea sp. 108 RepID=UPI00036FDECC
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:KEQ52091.1}; Flags: Precursor;; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
conjugal transfer protein TrbJ
SCNpilot_cont_500_bf_scaffold_3468_5
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3218..5602)
DNA (2385bp) protein (795aa)
conjugal transfer protein TrbE n=1 Tax=Hoeflea sp. 108 RepID=UPI000370FFC0
Conjugal transfer ATPase TrbE {ECO:0000313|EMBL:KEQ52092.1}; Flags: Precursor;; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
trbE; conjugal transfer protein TrbE; K03199 type IV secretion system protein VirB4
SCNpilot_cont_500_bf_scaffold_3468_6
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5615..5896)
DNA (282bp) protein (94aa)
Conjugal transfer protein TrbB n=1 Tax=Sphingomonas sp. LH128 RepID=J8W3V9_9SPHN
Conjugal transfer protein TrbB {ECO:0000313|EMBL:EJU15028.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
conjugal transfer protein TrbB; K03198 type IV secretion system protein VirB3
SCNpilot_cont_500_bf_scaffold_3468_7
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5896..6228)
DNA (333bp) protein (111aa)
conjugal transfer protein TrbC n=1 Tax=Hoeflea sp. 108 RepID=UPI0003815591
Conjugal transfer protein TrbC {ECO:0000313|EMBL:KHJ55165.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
trbC; conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
SCNpilot_cont_500_bf_scaffold_3468_8
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6225..7160)
DNA (936bp) protein (312aa)
conjugal transfer protein TrbB n=1 Tax=Hoeflea sp. 108 RepID=UPI00035F2A0D rbh
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:KEZ17841.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
SCNpilot_cont_500_bf_scaffold_3468_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7378..7812)
DNA (435bp) protein (145aa)
CopG family transcripitonal regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI0003822539
CopG family transcriptional regulator {ECO:0000313|EMBL:KIZ33065.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3468_10
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7822..9807)
DNA (1986bp) protein (662aa)
TRAG family protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F262_9RHIZ
Conjugal transfer coupling protein TraG {ECO:0000313|EMBL:KEZ17839.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
SCNpilot_cont_500_bf_scaffold_3468_11
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9834..11591)
DNA (1758bp) protein (586aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8W3V6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU15023.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3468_12
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11818..12579)
DNA (762bp) protein (254aa)
Lytic transglycosylase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VQK4_9SPHN
Lytic transglycosylase {ECO:0000313|EMBL:KEZ17837.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
lytic transglycosylase catalytic
SCNpilot_cont_500_bf_scaffold_3468_13
bacterium YEK0313, Bacteria

Not on your lists

comp(12583..12930)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8W5N8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CEJ11247.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3468_14
bacterium YEK0313, Bacteria

Not on your lists

comp(12977..13522)
DNA (546bp) protein (182aa)
Conjugal transfer protein TraF n=2 Tax=Sphingobium RepID=D4Z954_SPHJU
Peptidase S26 {ECO:0000313|EMBL:CEJ11248.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
traF; conjugal transfer protein TraF
SCNpilot_cont_500_bf_scaffold_3468_15
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13519..14040)
DNA (522bp) protein (174aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=D4Z955_SPHJU
Uncharacterized protein {ECO:0000313|EMBL:KEZ17834.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3468_16
bacterium YEK0313, Bacteria

Not on your lists

comp(14037..14291)
DNA (255bp) protein (85aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=D4Z956_SPHJU
Uncharacterized protein {ECO:0000313|EMBL:CEJ11250.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3468_17
bacterium YEK0313, Bacteria

Not on your lists

comp(14288..14602)
DNA (315bp) protein (105aa)
UPI0003D61451 related cluster n=1 Tax=unknown RepID=UPI0003D61451
Chromosome-partitioning ATPase Soj {ECO:0000313|EMBL:CEJ11251.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ParA-like protein; K03496 chromosome partitioning protein
SCNpilot_cont_500_bf_scaffold_3468_18
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15046..15642)
DNA (597bp) protein (199aa)
RepA replication protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000370002A
RepA replication protein {ECO:0000313|EMBL:KHJ55176.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
repA; replication protein A
SCNpilot_cont_500_bf_scaffold_3468_19
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15642..15863)
DNA (222bp) protein (74aa)
RepA replication protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0JAN9_9SPHN
RepA replication protein {ECO:0000313|EMBL:KHJ55176.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
putative plasmid replication protein A
SCNpilot_cont_500_bf_scaffold_3468_20
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15873..16151)
DNA (279bp) protein (93aa)
Putative phage transcriptional regulator AlpA n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HY50_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:KEQ52110.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
putative phage transcriptional regulator AlpA
SCNpilot_cont_500_bf_scaffold_3468_21
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16332..17006)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZGJ5_METPB
Uncharacterized protein {ECO:0000313|EMBL:AJE45686.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3468_22
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17220..17486)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z2L6_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI96848.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
SCNpilot_cont_500_bf_scaffold_3468_23
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17607..17849)
DNA (243bp) protein (81aa)
XRE family transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HY53_9RHIZ
XRE family transcriptional regulator {ECO:0000313|EMBL:EHK54335.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
XRE family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_3468_24
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18842..19285)
DNA (444bp) protein (148aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=D4Z965_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQB07230.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
SCNpilot_cont_500_bf_scaffold_3468_25
bacterium YEK0313, Bacteria

Not on your lists

comp(19427..19594)
DNA (168bp) protein (56aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=D4Z967_SPHJU
Uncharacterized protein {ECO:0000313|EMBL:CEJ11259.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3468_26
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19817..20197)
DNA (381bp) protein (127aa)
Putative fluoride ion transporter CrcB n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=CRCB_GRABC
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
crcB family protein; K06199 CrcB protein
SCNpilot_cont_500_bf_scaffold_3468_27
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20375..21298)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VC25_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EJN03502.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3468_28
Paracoccus sp. 39524, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21597..22634)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HRQ0_9RHIZ
DNA primase {ECO:0000313|EMBL:KGJ18048.1}; TaxID=1525718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 39524.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3468_29
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22634..24694)
DNA (2061bp) protein (687aa)
Phospholipid N-methyltransferase n=1 Tax=Phyllobacterium sp. YR531 RepID=J3CDJ9_9RHIZ
Methylase {ECO:0000313|EMBL:KEQ52210.1}; Flags: Precursor;; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
putative methylase/helicase
SCNpilot_cont_500_bf_scaffold_3468_30
unknown

Not on your lists

24717..24797
DNA (81bp) protein (27aa)

This feature has no annotations

Displaying 30 items

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