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SCNpilot_cont_500_bf_scaffold_540

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Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_540_1
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..204
DNA (204bp) protein (68aa)
Aspartyl-tRNA(Asn) amidotransferase subunit A (EC:6.3.5.6 6.3.5.7)
Aspartyl-tRNA(Asn) amidotransferase subunit A n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XVV5_ALCXX
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCNpilot_cont_500_bf_scaffold_540_2
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

402..1301
DNA (900bp) protein (300aa)
ABC-type spermidine/putrescine transport system, permease component I n=1 Tax=Rhizobium sp. CF080 RepID=J2I3H0_9RHIZ rbh
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:EUB99368.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
binding-protein-dependent transport systems inner membrane component; K02054 putative spermidine/putrescine transport system permease protein
SCNpilot_cont_500_bf_scaffold_540_3
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1298..2134
DNA (837bp) protein (279aa)
Polyamine-transporting ATPase {ECO:0000313|EMBL:EUB99369.1}; EC=3.6.3.31 {ECO:0000313|EMBL:EUB99369.1};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
ABC-type spermidine/putrescine transport system, ATPase component n=1 Tax=Rhizobium sp. CF080 RepID=J3BGP3_9RHIZ
transporter, permease
SCNpilot_cont_500_bf_scaffold_540_4
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2131..3270
DNA (1140bp) protein (380aa)
Polyamine-transporting ATPase {ECO:0000313|EMBL:EUB99369.1}; EC=3.6.3.31 {ECO:0000313|EMBL:EUB99369.1};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
ABC-type spermidine/putrescine transport system, ATPase component n=1 Tax=Rhizobium sp. CF080 RepID=J3BGP3_9RHIZ rbh
spermidine/putrescine ABC transporter ATP-binding subunit
SCNpilot_cont_500_bf_scaffold_540_5
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3294..4382
DNA (1089bp) protein (363aa)
Spermidine/putrescine-binding periplasmic protein n=1 Tax=Rhizobium sp. CF080 RepID=J2RCF4_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EUB99371.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
putative spermidine/putrescine transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_540_6
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4407..5183
DNA (777bp) protein (259aa)
aldolase n=1 Tax=Roseomonas sp. B5 RepID=UPI0002D93066 rbh
Class II Aldolase and Adducin domain protein {ECO:0000313|EMBL:EFH09905.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
class II aldolase/adducin family protein rbh
SCNpilot_cont_500_bf_scaffold_540_7
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5385..6356
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003647B02
D-isomer specific 2-hydroxyacid dehydrogenase
Phosphoglycerate dehydrogenase-like oxidoreductase {ECO:0000313|EMBL:EJE50334.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
SCNpilot_cont_500_bf_scaffold_540_8
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6367..6987
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036CAA05
hypothetical protein
Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family-like protein {ECO:0000313|EMBL:ABQ31822.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
SCNpilot_cont_500_bf_scaffold_540_9
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7008..7472)
DNA (465bp) protein (155aa)
Acyl dehydratase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0FY67_9BURK
Acyl dehydratase {ECO:0000313|EMBL:EOA06393.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
acyl dehydratase
SCNpilot_cont_500_bf_scaffold_540_10
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7546..8562)
DNA (1017bp) protein (339aa)
NMT1/THI5 like domain-containing protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BQ87_9RHIZ
NMT1/THI5 like domain-containing protein {ECO:0000313|EMBL:EIM71739.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
NMT1/THI5 like domain-containing protein; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_540_11
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8764..9537)
DNA (774bp) protein (258aa)
Transcriptional regulator, IclR family n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TRN2_TISMK
Putative IclR family transcriptional regulator {ECO:0000313|EMBL:GAK69590.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
kipR; transcriptional regulator, IclR family
SCNpilot_cont_500_bf_scaffold_540_12
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9680..10534
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000368F691 rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM31531.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
amino acid ABC transporter substrate-binding portion rbh
SCNpilot_cont_500_bf_scaffold_540_13
Pseudomonas oryzihabitans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10656..11375
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003715693
Amino acid ABC transporter permease {ECO:0000313|EMBL:KIZ50083.1}; TaxID=47885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas oryzihabitans.;"
amino acid ABC transporter; K02029 polar amino acid transport system permease protein
SCNpilot_cont_500_bf_scaffold_540_14
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11372..12031
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035EC3D4
ABC transporter permease {ECO:0000313|EMBL:EKF06507.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
SCNpilot_cont_500_bf_scaffold_540_15
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12041..12808
DNA (768bp) protein (256aa)
ABC transporter-like protein; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
Amino acid ABC transporter ATP-binding protein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2L8A6_9PROT
Amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:EKF06506.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
SCNpilot_cont_500_bf_scaffold_540_16
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12837..14093
DNA (1257bp) protein (419aa)
FAD dependent oxidoreductase; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
FAD dependent oxidoreductase n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0FBF0_9BURK
FAD dependent oxidoreductase {ECO:0000313|EMBL:EHK64415.1}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenitoxydans SY8.;"
SCNpilot_cont_500_bf_scaffold_540_17
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14225..15253
DNA (1029bp) protein (343aa)
UPI0003CE501D related cluster n=1 Tax=unknown RepID=UPI0003CE501D rbh
Uncharacterized protein {ECO:0000313|EMBL:ESY62373.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
nac; Nac protein
SCNpilot_cont_500_bf_scaffold_540_18
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15502..16665
DNA (1164bp) protein (388aa)
UPI0003CE3022 related cluster n=1 Tax=unknown RepID=UPI0003CE3022 rbh
Uncharacterized protein {ECO:0000313|EMBL:CDX36164.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
putative carnitine dehydratase/acyl-CoA transferases-related (COG1804)
SCNpilot_cont_500_bf_scaffold_540_19
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16662..17990
DNA (1329bp) protein (443aa)
MmgE/PrpD family protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5EYJ6_9RHIZ rbh
MmgE/PrpD family protein {ECO:0000313|EMBL:CCV10172.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
MmgE/PrpD family protein rbh
SCNpilot_cont_500_bf_scaffold_540_20
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17980..19140
DNA (1161bp) protein (387aa)
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:CCV10171.1}; EC=1.3.8.4 {ECO:0000313|EMBL:CCV10171.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Acyl-CoA dehydrogenase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F1F7_9RHIZ rbh
putative acyl-CoA dehydrogenase
SCNpilot_cont_500_bf_scaffold_540_21
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19159..20004
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00037CAD52 rbh
Uncharacterized protein {ECO:0000313|EMBL:CDX13865.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein; K09709 mesaconyl-C4 CoA hydratase rbh
SCNpilot_cont_500_bf_scaffold_540_22
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20004..20828
DNA (825bp) protein (275aa)
citrate lyase subunit beta-like protein; K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34]
HpcH/HpaI aldolase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FDR6_9RHIZ
HpcH/HpaI aldolase {ECO:0000313|EMBL:CDX13867.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_cont_500_bf_scaffold_540_23
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20841..22310
DNA (1470bp) protein (490aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] rbh
aldehyde dehydrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DBD283 rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:ABS66605.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_500_bf_scaffold_540_24
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22337..23086
DNA (750bp) protein (250aa)
fabG; 3-ketoacyl-ACP reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
3-ketoacyl-ACP reductase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003079E54 rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABS66606.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_500_bf_scaffold_540_25
Betaproteobacteria bacterium MOLA814, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23228..24739)
DNA (1512bp) protein (504aa)
Arabinose import ATP-binding protein AraG {ECO:0000313|EMBL:ESS15080.1}; EC=3.6.3.17 {ECO:0000313|EMBL:ESS15080.1};; TaxID=1408164 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="Betaproteobacteria bacterium MOLA814.;"
Arabinose import ATP-binding protein AraG n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V5AHI8_9PROT rbh
ABC transporter ATP-binding protein rbh
SCNpilot_cont_500_bf_scaffold_540_26
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24715..25806)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DKB6_BRAJP rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAL13745.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_500_bf_scaffold_540_27
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25799..27901)
DNA (2103bp) protein (701aa)
Inner-membrane translocator n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WNP7_VEREI rbh
inner-membrane translocator rbh
Inner-membrane translocator {ECO:0000313|EMBL:ABM59254.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_cont_500_bf_scaffold_540_28
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27995..29005)
DNA (1011bp) protein (337aa)
ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FI08_9RHIZ
ABC transporter ribose permease {ECO:0000313|EMBL:GAN77431.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
ABC transporter substrate-binding protein
SCNpilot_cont_500_bf_scaffold_540_29
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29061..30110)
DNA (1050bp) protein (350aa)
ABC transporter permease protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TII6_9BRAD rbh
Bradyrhizobium elkanii strain UASWS1015 Contig176, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48669.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
ABC transporter permease; K02057 simple sugar transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_540_30
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30937..31725
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036AA634
Short-chain dehydrogenase/reductase SDR
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
Displaying items 1-30 of 70 in total

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