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SCNpilot_cont_500_bf_scaffold_942

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_942_1
Thalassospira xiamenensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..239)
DNA (237bp) protein (79aa)
Choline dehydrogenase {ECO:0000256|RuleBase:RU003969}; EC=1.1.99.1 {ECO:0000256|RuleBase:RU003969};; TaxID=1123366 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira xiamenensis M-5 = DSM 17429.;"
CHDH; choline dehydrogenase; K00108 choline dehydrogenase [EC:1.1.99.1]
choline dehydrogenase n=1 Tax=Thalassospira lucentensis RepID=UPI0003B4CA57
SCNpilot_cont_500_bf_scaffold_942_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

349..1302
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI00036A0216
Aldo/keto reductase {ECO:0000313|EMBL:EEF60782.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
aldo/keto reductase
SCNpilot_cont_500_bf_scaffold_942_3
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1332..2195)
DNA (864bp) protein (288aa)
Beta-lactamase domain protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BB73_PARDP
beta-lactamase domain-containing protein
Beta-lactamase domain protein {ECO:0000313|EMBL:ABL72767.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_cont_500_bf_scaffold_942_4
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2417..3208
DNA (792bp) protein (264aa)
Formyltetrahydrofolate deformylase {ECO:0000256|HAMAP-Rule:MF_01927}; EC=3.5.1.10 {ECO:0000256|HAMAP-Rule:MF_01927};; Formyl-FH(4) hydrolase {ECO:0000256|HAMAP-Rule:MF_01927}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
purU; formyltetrahydrofolate deformylase (EC:3.5.1.10)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000315FD79
SCNpilot_cont_500_bf_scaffold_942_5
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3205..4071
DNA (867bp) protein (289aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
metF; methylenetetrahydrofolate reductase (EC:1.5.1.20); K00297 methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20]
5,10-methylenetetrahydrofolate reductase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RUD8_9RHIZ
SCNpilot_cont_500_bf_scaffold_942_6
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4559..8011
DNA (3453bp) protein (1151aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y092_MESOW
outer membrane autotransporter barrel domain-containing protein
Outer membrane autotransporter barrel domain protein {ECO:0000313|EMBL:AEH90458.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_500_bf_scaffold_942_7
Mesorhizobium sp. LNJC405B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8144..9175)
DNA (1032bp) protein (344aa)
UPI0003CE05C4 related cluster n=1 Tax=unknown RepID=UPI0003CE05C4 rbh
Aminopeptidase {ECO:0000313|EMBL:ESY02517.1}; TaxID=1287281 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC405B00.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_942_8
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9478..10356
DNA (879bp) protein (293aa)
diaminopimelate epimerase; K01778 diaminopimelate epimerase [EC:5.1.1.7] rbh
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197};; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
Diaminopimelate epimerase n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3Q277_RHIE6 rbh
SCNpilot_cont_500_bf_scaffold_942_9
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10377..11531)
DNA (1155bp) protein (385aa)
UPI0003CF952B related cluster n=1 Tax=unknown RepID=UPI0003CF952B rbh
Polyamine transporter subunit ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CDX40552.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
ABC-type spermidine/putrescine transport system, ATPase component rbh
SCNpilot_cont_500_bf_scaffold_942_10
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11524..12666)
DNA (1143bp) protein (381aa)
Spermidine/putrescine binding protein of ABC transporter n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98JB0_RHILO rbh
spermidine/putrescine ABC transporter substrate-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein rbh
Spermidine/putrescine binding protein of ABC transporter {ECO:0000313|EMBL:BAB49256.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_500_bf_scaffold_942_11
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12663..13499)
DNA (837bp) protein (279aa)
UPI0003CDE790 related cluster n=1 Tax=unknown RepID=UPI0003CDE790 rbh
Polyamine transporter subunit membrane component of ABC superfamily {ECO:0000313|EMBL:CDX17372.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC-type spermidine/putrescine transport system, permease component II rbh
SCNpilot_cont_500_bf_scaffold_942_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13513..14391)
DNA (879bp) protein (293aa)
Permease protein of ABC transporter n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98JB2_RHILO rbh
Permease protein of ABC transporter {ECO:0000313|EMBL:CDX21601.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter permease; K02054 putative spermidine/putrescine transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_942_13
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14644..15195)
DNA (552bp) protein (184aa)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UNP5_METS4
ErfK/YbiS/YcfS/YnhG family protein
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:ACA17150.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_500_bf_scaffold_942_14
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15422..16477)
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037E53E9 rbh
helix-turn-helix domain-containing protein
Helix-turn-helix-domain containing protein AraC type {ECO:0000313|EMBL:ABR64014.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_cont_500_bf_scaffold_942_15
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16748..17785)
DNA (1038bp) protein (346aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037E53E9
helix-turn-helix domain-containing protein
Helix-turn-helix-domain containing protein AraC type {ECO:0000313|EMBL:ABR64014.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_cont_500_bf_scaffold_942_16
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18122..19102)
DNA (981bp) protein (327aa)
Putative AraC family transcriptional regulator n=1 Tax=Pseudomonas putida CSV86 RepID=L1LSA3_PSEPU
Putative AraC family transcriptional regulator {ECO:0000313|EMBL:EKX81705.1}; TaxID=1005395 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida CSV86.;"
AraC family transcriptional regulator; K04033 AraC family transcriptional regulator, ethanolamine operon transcriptional activator
SCNpilot_cont_500_bf_scaffold_942_17
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19524..20987)
DNA (1464bp) protein (488aa)
Serine endoprotease, periplasmic {ECO:0000313|EMBL:CDX18845.1}; EC=3.4.21.- {ECO:0000313|EMBL:CDX18845.1};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
serine protease; K01362 [EC:3.4.21.-]
Serine protease n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q985F9_RHILO
SCNpilot_cont_500_bf_scaffold_942_18
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21691..23271)
DNA (1581bp) protein (527aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003717D71 rbh
Aminobenzoyl-glutamate utilization protein B {ECO:0000313|EMBL:CDP52040.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
amidohydrolase; K12941 aminobenzoyl-glutamate utilization protein B
SCNpilot_cont_500_bf_scaffold_942_19
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23448..23639)
DNA (192bp) protein (64aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I0E4_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK53556.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_cont_500_bf_scaffold_942_20
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23694..24404)
DNA (711bp) protein (237aa)
MgtC/SapB transporter n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3HVL8_9RHIZ
MgtC/SapB transporter {ECO:0000313|EMBL:EMG51707.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
MgtC/SapB transporter; K07507 putative Mg2+ transporter-C (MgtC) family protein
SCNpilot_cont_500_bf_scaffold_942_21
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24438..25625)
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JL15_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EEQ95487.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_942_22
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25644..26351)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EL76_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:CDP51373.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_942_23
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26596..29766)
DNA (3171bp) protein (1057aa)
transporter n=1 Tax=Ochrobactrum anthropi RepID=UPI000289E125 rbh
RND transporter {ECO:0000313|EMBL:EXL05869.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
hydrophobe/amphiphile efflux-1 (HAE1) family protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family rbh
SCNpilot_cont_500_bf_scaffold_942_24
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29763..30902)
DNA (1140bp) protein (380aa)
hemolysin D n=1 Tax=Ochrobactrum anthropi RepID=UPI000289D1B6 rbh
Hemolysin D {ECO:0000313|EMBL:EXL05870.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
RND family efflux transporter MFP subunit; K03585 membrane fusion protein rbh
SCNpilot_cont_500_bf_scaffold_942_25
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30923..31483)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3IYC0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EEQ95496.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_942_26
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31676..33127)
DNA (1452bp) protein (484aa)
Putative amidohydrolase n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XYV0_RHIRD
Putative amidohydrolase {ECO:0000313|EMBL:EHH04137.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
putative amidohydrolase
SCNpilot_cont_500_bf_scaffold_942_27
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33155..34351)
DNA (1197bp) protein (399aa)
Succinylglutamate desuccinylase/aspartoacylase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X1P2_OCHA4 rbh
Peptidase M14 {ECO:0000313|EMBL:KFL29994.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
succinylglutamate desuccinylase/aspartoacylase; K06987 rbh
SCNpilot_cont_500_bf_scaffold_942_28
unknown

Not on your lists

34655..34813
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_942_29
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34824..36278)
DNA (1455bp) protein (485aa)
amino acid APC transporter n=1 Tax=Hoeflea sp. 108 RepID=UPI00038285D5 rbh
Transporter, basic amino acid/polyamine antiporter (APA) family {ECO:0000313|EMBL:EJJ28749.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
arginine/ornithine antiporter; K03758 arginine:ornithine antiporter rbh
SCNpilot_cont_500_bf_scaffold_942_30
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36507..37940
DNA (1434bp) protein (478aa)
amino acid APC transporter n=1 Tax=Hoeflea sp. 108 RepID=UPI000367C0F9
Transporter, basic amino acid/polyamine antiporter (APA) family {ECO:0000313|EMBL:EJJ28748.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
arginine/ornithine antiporter; K03758 arginine:ornithine antiporter
Displaying items 1-30 of 60 in total

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