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SCNpilot_cont_500_bf_scaffold_1639

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1639_1
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..809)
DNA (807bp) protein (269aa)
uroporphyrin-III C-methyltransferase; K02302 uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
Uroporphyrin-III C-methyltransferase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y5J4_MESOW
Uroporphyrin-III C-methyltransferase {ECO:0000313|EMBL:AEH86250.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_500_bf_scaffold_1639_2
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1323..1769
DNA (447bp) protein (149aa)
Host attachment protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y4X0_9RHIZ
Host attachment protein {ECO:0000313|EMBL:EHH13205.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
host attachment protein
SCNpilot_cont_500_bf_scaffold_1639_3
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1978..3792
DNA (1815bp) protein (605aa)
Sodium/hydrogen exchanger n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TCM7_MESCW rbh
sodium/hydrogen exchanger; K03455 monovalent cation:H+ antiporter-2, CPA2 family rbh
Sodium/hydrogen exchanger {ECO:0000313|EMBL:ADV10869.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_500_bf_scaffold_1639_4
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3978..4658)
DNA (681bp) protein (227aa)
UPI0003CEF127 related cluster n=1 Tax=unknown RepID=UPI0003CEF127 rbh
Protein FixR {ECO:0000313|EMBL:CDX32665.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_cont_500_bf_scaffold_1639_5
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5098..7290)
DNA (2193bp) protein (731aa)
Penicillin-binding protein, 1A family n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y4X5_9RHIZ rbh
Penicillin-binding protein, 1A family {ECO:0000313|EMBL:EHH13210.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
penicillin-binding protein, 1A family rbh
SCNpilot_cont_500_bf_scaffold_1639_6

Not on your lists

comp(7470..8138)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Vibrio cyclitrophicus RepID=UPI000300A281
Uncharacterized protein {ECO:0000313|EMBL:KKN92889.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_cont_500_bf_scaffold_1639_7
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8578..8961)
DNA (384bp) protein (128aa)
Mll3289 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98GK1_RHILO
hypothetical protein
Mll3289 protein {ECO:0000313|EMBL:BAB50215.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_500_bf_scaffold_1639_8
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9212..9358)
DNA (147bp) protein (49aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y4X8_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH13213.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1639_9
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9468..9722)
DNA (255bp) protein (85aa)
Transglycosylase-associated protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y5I3_MESOW
transglycosylase-associated protein
Membrane protein {ECO:0000313|EMBL:ESY77757.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
SCNpilot_cont_500_bf_scaffold_1639_10
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9879..10079)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y5I2_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH86238.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_500_bf_scaffold_1639_11
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10189..10812)
DNA (624bp) protein (208aa)
3'-5' exonuclease; K03684 ribonuclease D [EC:3.1.13.5] rbh
3'-5' exonuclease n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y4Y1_9RHIZ rbh
3'-5' exonuclease {ECO:0000313|EMBL:EHH13216.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
SCNpilot_cont_500_bf_scaffold_1639_12
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10948..12333)
DNA (1386bp) protein (462aa)
UPI0003CE5493 related cluster n=1 Tax=unknown RepID=UPI0003CE5493 rbh
Uncharacterized protein {ECO:0000313|EMBL:ESY77754.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
peptidase M20 rbh
SCNpilot_cont_500_bf_scaffold_1639_13
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12833..13918)
DNA (1086bp) protein (362aa)
Probable lactose transport ATP-binding protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D0L0_9RHIZ
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EZQ13059.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
lacK; lactose ABC transporter ATP-binding protein; K02023 multiple sugar transport system ATP-binding protein rbh
SCNpilot_cont_500_bf_scaffold_1639_14
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13929..14756)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003788BC7 rbh
ABC transporter permease {ECO:0000313|EMBL:AJY47306.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
ABC transporter permease; K02026 multiple sugar transport system permease protein
SCNpilot_cont_500_bf_scaffold_1639_15
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14753..15625)
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003754726 rbh
Permease component of ABC-type sugar transporter {ECO:0000313|EMBL:AKI02659.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
ABC transporter permease; K02025 multiple sugar transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_1639_16
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15645..16931)
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000378DE0E rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM32712.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
putative ABC transporter substrate binding protein; K02027 multiple sugar transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_1639_17
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16968..17705)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000303515C rbh
Uncharacterized protein {ECO:0000313|EMBL:EXL02346.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1639_18
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17702..18439)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037F62CB
Transcriptional regulator {ECO:0000313|EMBL:AKI02662.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_1639_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18501..19994)
DNA (1494bp) protein (498aa)
Xylulose kinase XylB {ECO:0000313|EMBL:EYR84479.1}; EC=2.7.1.17 {ECO:0000313|EMBL:EYR84479.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
xylB; xylulose kinase; K00854 xylulokinase [EC:2.7.1.17] rbh
Xylulose kinase XylB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG77_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_1639_20
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20070..20825)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000372A07A
Putative transcriptional regulator of N-acetylglucosamine utilization, GntR family {ECO:0000313|EMBL:KFC71116.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
HTH-type transcriptional repressor, GntR family; K03710 GntR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_1639_21
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21131..24082
DNA (2952bp) protein (984aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7] rbh
UPI0003CE434E related cluster n=1 Tax=unknown RepID=UPI0003CE434E rbh
DNA polymerase I {ECO:0000313|EMBL:ESY77753.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
Displaying 21 items

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