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SCNpilot_cont_500_bf_scaffold_1998

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1998_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..337)
DNA (336bp) protein (112aa)
Transcriptional regulator, LacI family n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A0Q3_MAHA5
Ribose operon repressor {ECO:0000313|EMBL:EYR80195.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_1998_2
unknown

Not on your lists

comp(430..1098)
DNA (669bp) protein (223aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1998_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1105..2019)
DNA (915bp) protein (305aa)
Catabolite control protein A (Glucose-resistance amylase regulator) n=1 Tax=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) RepID=B5Y648_COPPD
Ribose operon repressor {ECO:0000313|EMBL:EYR80195.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
catabolite control protein A (glucose-resistance amylase regulator); K02529 LacI family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_1998_4
Paenibacillus sabinae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2197..3165
DNA (969bp) protein (323aa)
Inosine-uridine nucleoside N-ribohydrolase n=1 Tax=Sporolactobacillus laevolacticus DSM 442 RepID=V6IW82_9BACL rbh
Ribonucleoside hydrolase 1 {ECO:0000313|EMBL:AHV96371.1}; TaxID=1268072 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sabinae T27.;"
inosine/uridine-preferring nucleoside hydrolase
SCNpilot_cont_500_bf_scaffold_1998_5
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3165..4826
DNA (1662bp) protein (554aa)
Family 5 extracellular solute-binding protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUX6_9RHIZ
Family 5 extracellular solute-binding protein {ECO:0000313|EMBL:EHK55455.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
family 5 extracellular solute-binding protein
SCNpilot_cont_500_bf_scaffold_1998_6
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4944..5510
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035C7DA1
nucleoside 2-deoxyribosyltransferase
Nucleoside 2-deoxyribosyltransferase {ECO:0000313|EMBL:EJK87862.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_cont_500_bf_scaffold_1998_7
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5562..6164)
DNA (603bp) protein (201aa)
TetR family transcriptional regulator n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YIZ5_9RHIZ
TetR family transcriptional regulator {ECO:0000313|EMBL:EHH05499.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
transcriptional regulator, TetR family
SCNpilot_cont_500_bf_scaffold_1998_8
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6314..7258
DNA (945bp) protein (315aa)
Glycine betaine/proline ABC transporter, periplasmic substrate-binding protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YIZ6_9RHIZ rbh
Glycine betaine/proline ABC transporter, periplasmic substrate-binding protein {ECO:0000313|EMBL:EHH05500.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
proline/glycine betaine ABC transporter periplasmatic substrate-binding protein
SCNpilot_cont_500_bf_scaffold_1998_9
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7301..8359
DNA (1059bp) protein (353aa)
Glycine betaine/L-proline ABC transporter ATPase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YIZ7_9RHIZ rbh
Glycine betaine/L-proline ABC transporter ATPase {ECO:0000313|EMBL:EHH05501.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
glycine betaine/L-proline transport ATP binding subunit rbh
SCNpilot_cont_500_bf_scaffold_1998_10
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8346..10430
DNA (2085bp) protein (695aa)
Glycine betaine/proline ABC transporter, permease protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YIZ8_9RHIZ rbh
Glycine betaine/proline ABC transporter, permease protein {ECO:0000313|EMBL:EHH05502.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
proline/glycine betaine ABC transporter permease protein rbh
SCNpilot_cont_500_bf_scaffold_1998_11
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10456..11382
DNA (927bp) protein (309aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YIZ9_9RHIZ rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHH05503.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1998_12
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11416..12054)
DNA (639bp) protein (213aa)
NAD-dependent epimerase/dehydratase n=2 Tax=Oligotropha carboxidovorans RepID=B6JF35_OLICO
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:AEI06987.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_1998_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12124..13080)
DNA (957bp) protein (319aa)
Putative S15 family serine protease n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LPC4_RHITR
putative S15 family serine protease
Putative S15 family serine protease {ECO:0000313|EMBL:AGB73213.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_1998_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13215..14105
DNA (891bp) protein (297aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium radiobacter RepID=UPI00036A5B67
LysR family transcriptional regulator {ECO:0000313|EMBL:EPR22669.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
LysR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_1998_15
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14363..15202
DNA (840bp) protein (280aa)
Glycosyl transferase family 2 n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FSX2_9RHIZ rbh
Glycosyl transferase family 2 {ECO:0000313|EMBL:ESX82343.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
glycosyl transferase family 2
SCNpilot_cont_500_bf_scaffold_1998_16
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15809..15898
DNA (90bp) protein (30aa)
K+-transporting ATPase, KdpF subunit n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KIX6_MESAW
K+-transporting ATPase, KdpF subunit
ATPase {ECO:0000313|EMBL:ESY96390.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
SCNpilot_cont_500_bf_scaffold_1998_17
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15926..17548
DNA (1623bp) protein (541aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L
UPI0003CFDA50 related cluster n=1 Tax=unknown RepID=UPI0003CFDA50
K+-transporting ATPase, KdpA
SCNpilot_cont_500_bf_scaffold_1998_18
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17556..17765
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDR2_MESCW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV10955.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_500_bf_scaffold_1998_19
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17762..19795
DNA (2034bp) protein (678aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakui
K+-transporting ATPase subunit beta; K01547 K+-transporting ATPase ATPase B chain [EC:3.6.3.12] rbh
potassium-transporting ATPase subunit B n=1 Tax=Rhizobium loti RepID=UPI000373F6E9 rbh
SCNpilot_cont_500_bf_scaffold_1998_20
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19807..20376
DNA (570bp) protein (190aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakui
potassium-transporting ATPase subunit C; K01548 K+-transporting ATPase ATPase C chain [EC:3.6.3.12] rbh
ATPase n=1 Tax=Rhizobium loti RepID=UPI0003762FE9 rbh
SCNpilot_cont_500_bf_scaffold_1998_21
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20636..21220)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Burkholderia cenocepacia KC-01 RepID=V5BSI8_9BURK
Uncharacterized protein {ECO:0000313|EMBL:ESS37970.1}; TaxID=1396830 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia KC-01.;"
SCNpilot_cont_500_bf_scaffold_1998_22
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21357..23096
DNA (1740bp) protein (580aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
osmosensitive K channel His kinase sensor; K07646 two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
Histidine kinase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FM30_9RHIZ
SCNpilot_cont_500_bf_scaffold_1998_23
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23093..23785
DNA (693bp) protein (231aa)
UPI0003CEFEC0 related cluster n=1 Tax=unknown RepID=UPI0003CEFEC0 rbh
Fis family transcriptional regulator {ECO:0000313|EMBL:ESY67612.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
response regulator receiver; K07667 two-component system, OmpR family, KDP operon response regulator KdpE
SCNpilot_cont_500_bf_scaffold_1998_24
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23809..24399)
DNA (591bp) protein (197aa)
UPI0003CE144E related cluster n=1 Tax=unknown RepID=UPI0003CE144E
Uncharacterized protein {ECO:0000313|EMBL:CDX55197.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Invasion protein B, involved in pathogenesis
SCNpilot_cont_500_bf_scaffold_1998_25
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24434..29446)
DNA (5013bp) protein (1671aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TCT7_MESCW
Outer membrane autotransporter barrel domain protein {ECO:0000313|EMBL:CDX55198.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
outer membrane autotransporter barrel domain-containing protein
SCNpilot_cont_500_bf_scaffold_1998_26
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29496..30863)
DNA (1368bp) protein (456aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TCT7_MESCW
Outer membrane autotransporter barrel domain protein {ECO:0000313|EMBL:CDX44643.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
outer membrane autotransporter barrel domain-containing protein
SCNpilot_cont_500_bf_scaffold_1998_27
RIFOXYD2_FULL_Proteobacteria_50_16_curated, Proteobacteria, Bacteria

Not on your lists

30931..31968
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Eimeria necatrix RepID=U6MZQ2_9EIME
Tax=RIFOXYD2_FULL_Proteobacteria_50_16_curated
Displaying 27 items

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