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SCNpilot_cont_500_bf_scaffold_8008

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_8008_1
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16..837)
DNA (822bp) protein (274aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. AP16 RepID=J2WW35_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EJK86410.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
putative IclR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_8008_2
Marinomonas sp. S3726, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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919..2085
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036079B4 rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ16494.1}; TaxID=579484 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas sp. S3726.;"
mandelate racemase/muconate lactonizing domain-containing protein
SCNpilot_cont_500_bf_scaffold_8008_3
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(2048..2803)
DNA (756bp) protein (252aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
short-chain dehydrogenase n=1 Tax=Rudanella lutea RepID=UPI00036B9C05
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACT94255.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_cont_500_bf_scaffold_8008_4
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3171..3893
DNA (723bp) protein (241aa)
GntR family transcriptional regulator n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MD37_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:EKF18645.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
pdhR; GntR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_8008_5
Paenibacillus durus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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3890..4945
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037AED34 rbh
Uncharacterized protein {ECO:0000313|EMBL:AKG36303.1}; TaxID=1333534 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus durus ATCC 35681.;"
family 1 extracellular solute-binding protein
SCNpilot_cont_500_bf_scaffold_8008_6
Paenibacillus durus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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5047..6255
DNA (1209bp) protein (403aa)
mandelate racemase/muconate lactonizing protein n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002628A80 rbh
Uncharacterized protein {ECO:0000313|EMBL:AIQ14423.1}; TaxID=44251 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus durus (Paenibacillus azotofixans).;"
mandelate racemase/muconate lactonizing protein
SCNpilot_cont_500_bf_scaffold_8008_7
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6258..7226
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036E8875
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADV14321.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_500_bf_scaffold_8008_8
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7223..8065
DNA (843bp) protein (281aa)
UPI0003CF1C37 related cluster n=1 Tax=unknown RepID=UPI0003CF1C37
ABC transporter permease {ECO:0000313|EMBL:ESY86757.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
ABC-type spermidine/putrescine transport system, permease component I
SCNpilot_cont_500_bf_scaffold_8008_9
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8068..8868
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036388A1
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDX46118.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter permease; K02053 putative spermidine/putrescine transport system permease protein
SCNpilot_cont_500_bf_scaffold_8008_10
Mesorhizobium sp. LSHC414A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8865..9641
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003701E46 rbh
Short-chain dehydrogenase {ECO:0000313|EMBL:ESX79407.1}; TaxID=1287287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC414A00.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_500_bf_scaffold_8008_11
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9669..10820
DNA (1152bp) protein (384aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0N9_STAND
mandelate racemase/muconate lactonizing protein
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:ADH91360.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_500_bf_scaffold_8008_12
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10857..12212)
DNA (1356bp) protein (452aa)
UPI0003CE8085 related cluster n=1 Tax=unknown RepID=UPI0003CE8085 rbh
Quinone oxidoreductase {ECO:0000313|EMBL:ESY81233.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
alcohol dehydrogenase zinc-binding domain-containing protein rbh
SCNpilot_cont_500_bf_scaffold_8008_13
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12265..12669)
DNA (405bp) protein (135aa)
Polyketide cyclase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FQS7_9RHIZ
Polyketide cyclase {ECO:0000313|EMBL:ESX83003.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
polyketide cyclase/dehydrase
SCNpilot_cont_500_bf_scaffold_8008_14
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12703..13161)
DNA (459bp) protein (153aa)
UPI0003CF6BF9 related cluster n=1 Tax=unknown RepID=UPI0003CF6BF9
Membrane protein {ECO:0000313|EMBL:ESY69211.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
hypothetical protein
Displaying 14 items

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