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SCNpilot_cont_500_bf_scaffold_3539

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3539_1
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..536
DNA (534bp) protein (178aa)
Sigma-54 interacting transcription regulator protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y6Y9_9RHIZ
Sigma-54 interacting transcription regulator protein {ECO:0000313|EMBL:EHH12549.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
transcriptional regulator; K14414 transcriptional regulatory protein RtcR
SCNpilot_cont_500_bf_scaffold_3539_2
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(610..915)
DNA (306bp) protein (102aa)
UPI0003D01076 related cluster n=1 Tax=unknown RepID=UPI0003D01076
Uncharacterized protein {ECO:0000313|EMBL:ESZ25497.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3539_3
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(912..1184)
DNA (273bp) protein (91aa)
LuxR family transcriptional regulator n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TKW7_MESCW
LuxR family transcriptional regulator
LuxR family transcriptional regulator {ECO:0000313|EMBL:ADV10277.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_500_bf_scaffold_3539_4
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1195..1368)
DNA (174bp) protein (58aa)
UPI0003CE8225 related cluster n=1 Tax=unknown RepID=UPI0003CE8225
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESY80474.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
SCNpilot_cont_500_bf_scaffold_3539_5
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1441..1857)
DNA (417bp) protein (139aa)
Nitroreductase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EKU3_9RHIZ
Nitroreductase {ECO:0000313|EMBL:CCV04947.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
SagB-type dehydrogenase domain-containing protein
SCNpilot_cont_500_bf_scaffold_3539_6
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2100..2420)
DNA (321bp) protein (107aa)
UPI0003CFA2FF related cluster n=1 Tax=unknown RepID=UPI0003CFA2FF
Dehydrogenase {ECO:0000313|EMBL:ESZ25499.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
SagB-type dehydrogenase domain-containing protein
SCNpilot_cont_500_bf_scaffold_3539_7
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2484..2579)
DNA (96bp) protein (32aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F166_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV11102.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
SCNpilot_cont_500_bf_scaffold_3539_8
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2972..3721)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F460_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CCV11101.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_3539_9
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4403..5047)
DNA (645bp) protein (215aa)
Uncharacterized protein n=3 Tax=Salmonella enterica I RepID=V1SXT1_SALET
HNH endonuclease family protein {ECO:0000313|EMBL:AIO40272.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
HNH endonuclease family protein
SCNpilot_cont_500_bf_scaffold_3539_10
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5044..6354)
DNA (1311bp) protein (437aa)
hypothetical protein n=1 Tax=Methylotenera mobilis RepID=UPI000371499F rbh
Uncharacterized protein {ECO:0000313|EMBL:KJB92018.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
ATP-dependent endonuclease of the OLD family-like protein
SCNpilot_cont_500_bf_scaffold_3539_11
unknown

Not on your lists

comp(6602..6856)
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_3539_trna_1
unknown

Not on your lists

comp(6925..6997)
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_3539_12
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7251..7541
DNA (291bp) protein (97aa)
membrane protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003638970
Membrane protein {ECO:0000313|EMBL:EZQ14317.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein; K02221 YggT family protein
SCNpilot_cont_500_bf_scaffold_3539_13
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7546..7863
DNA (318bp) protein (106aa)
UPI0003CF96B9 related cluster n=1 Tax=unknown RepID=UPI0003CF96B9
UPF0235 protein MPL3365_150073 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3539_14
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7939..8820)
DNA (882bp) protein (294aa)
Transcriptional regulator n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98EP3_RHILO rbh
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:CDX52351.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_3539_15
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8831..9898)
DNA (1068bp) protein (356aa)
sugar ABC transporter ATP-binding protein n=1 Tax=Rhizobium loti RepID=UPI0003723E61 rbh
Fused maltose transport subunit, ATP-binding component of ABC superfamily regulatory protein {ECO:0000313|EMBL:CDX46538.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
sugar ABC transporter ATP-binding protein; K02023 multiple sugar transport system ATP-binding protein rbh
SCNpilot_cont_500_bf_scaffold_3539_16
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9901..10671)
DNA (771bp) protein (257aa)
UPI0003CF5299 related cluster n=1 Tax=unknown RepID=UPI0003CF5299 rbh
Catenin {ECO:0000313|EMBL:ESY94185.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein rbh
SCNpilot_cont_500_bf_scaffold_3539_17
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10852..12078
DNA (1227bp) protein (409aa)
Sugar ABC transporter, sugar-binding protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98EP6_RHILO rbh
Uncharacterized protein {ECO:0000313|EMBL:CDX42257.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
sugar ABC transporter (sugar-binding protein); K02027 multiple sugar transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_3539_18
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12250..13176
DNA (927bp) protein (309aa)
Sugar ABC transporter, permease protein ThuF n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98EP7_RHILO rbh
Uncharacterized protein {ECO:0000313|EMBL:CDX25565.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
sugar ABC transporter permease; K02025 multiple sugar transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_3539_19
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13173..13997
DNA (825bp) protein (275aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TKX9_MESCW rbh
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADV10289.1}; Flags: Precursor;; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_500_bf_scaffold_3539_20
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14583..15635
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00035E706D rbh
Microcystinase C {ECO:0000256|PIRNR:PIRNR012702}; Short=MlrC {ECO:0000256|PIRNR:PIRNR012702};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_3539_21
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15770..16687
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI0003705500 rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:KFX29147.1}; TaxID=305 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (Pseudomonas solanacearum).;"
putative transcriptional regulator, LysR family
SCNpilot_cont_500_bf_scaffold_3539_22
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16858..17673
DNA (816bp) protein (272aa)
5-formyltetrahydrofolate cyclo-ligase; K01934 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI0003710329 rbh
Putative 5-formyltetrahydrofolate cyclo-ligase {ECO:0000313|EMBL:ADZ70386.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_500_bf_scaffold_3539_23
Ewingella americana, Ewingella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17784..18791
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI000379AD55 rbh
Periplasmic substrate-binding component of an ABC superfamily nucleoside transporter {ECO:0000313|EMBL:KFC78825.1}; TaxID=910964 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Ewingella.;" source="Ewingella americana ATCC 33852.;"
sugar ABC transporter periplasmic sugar-binding protein; K07335 basic membrane protein A and related proteins rbh
SCNpilot_cont_500_bf_scaffold_3539_24
Pantoea sp. GM01, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19102..20652
DNA (1551bp) protein (517aa)
sugar ABC transporter ATP-binding protein; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] rbh
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI000378FCB1 rbh
ATPase component of uncharacterized ABC-type transporter {ECO:0000313|EMBL:EJL87247.1}; Flags: Precursor;; TaxID=1144320 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. GM01.;"
SCNpilot_cont_500_bf_scaffold_3539_25
Serratia sp. M24T3, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20649..21761
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00036E34CC rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:EIC82461.1}; TaxID=932213 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia sp. M24T3.;"
sugar ABC transporter permease; K02057 simple sugar transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_3539_26
Ewingella americana, Ewingella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21763..22701
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI0003609A87 rbh
Permease component of an ABC superfamily monosaccharide transporter {ECO:0000313|EMBL:KFC78822.1}; TaxID=910964 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Ewingella.;" source="Ewingella americana ATCC 33852.;"
sugar ABC transporter permease; K02057 simple sugar transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_3539_27
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22752..24164)
DNA (1413bp) protein (471aa)
Zn-dependent oligopeptidase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KGJ4_MESAW
Peptidyl-dipeptidase {ECO:0000313|EMBL:CDX42246.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
Zn-dependent oligopeptidase
SCNpilot_cont_500_bf_scaffold_3539_28
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24112..24705)
DNA (594bp) protein (198aa)
peptidyl-dipeptidase Dcp (EC:3.4.15.5); K01284 peptidyl-dipeptidase Dcp [EC:3.4.15.5]
UPI0003CEEFCC related cluster n=1 Tax=unknown RepID=UPI0003CEEFCC
Peptidyl-dipeptidase Dcp {ECO:0000313|EMBL:CDX25540.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
SCNpilot_cont_500_bf_scaffold_3539_29
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24844..25062)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EJT0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV04627.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein
Displaying 30 items

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