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SCNpilot_cont_500_bf_scaffold_2433

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2433_1
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..798
DNA (798bp) protein (266aa)
NADH-ubiquinone oxidoreductase subunit H; K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
NADH:ubiquinone oxidoreductase subunit H n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F56AE1
SCNpilot_cont_500_bf_scaffold_2433_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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815..1303
DNA (489bp) protein (163aa)
NADH-quinone oxidoreductase subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01351};; NADH dehydrogenase I subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; NDH-1 subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
nuoI; NADH-quinone oxidoreductase subunit I; K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3]
NADH dehydrogenase subunit I n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D8AD6D rbh
SCNpilot_cont_500_bf_scaffold_2433_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1314..1925
DNA (612bp) protein (204aa)
NADH-ubiquinone/plastoquinone oxidoreductase subunit 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3]
NADH:ubiquinone oxidoreductase subunit J n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031F0BC1
NADH-quinone oxidoreductase subunit J {ECO:0000313|EMBL:KFC69024.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_cont_500_bf_scaffold_2433_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1938..2246
DNA (309bp) protein (103aa)
nuoK; NADH dehydrogenase subunit K (EC:1.6.5.3); K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
NADH-quinone oxidoreductase subunit K n=3 Tax=Agrobacterium RepID=NUOK_AGRT5
SCNpilot_cont_500_bf_scaffold_2433_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2250..4265
DNA (2016bp) protein (672aa)
Proton-translocating NADH-quinone oxidoreductase, chain L {ECO:0000313|EMBL:KFC69022.1}; EC=1.6.99.5 {ECO:0000313|EMBL:KFC69022.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
proton-translocating NADH-quinone oxidoreductase subunit L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] rbh
NADH:ubiquinone oxidoreductase subunit L n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030AA405 rbh
SCNpilot_cont_500_bf_scaffold_2433_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4265..5770
DNA (1506bp) protein (502aa)
nuoM; NADH-quinone oxidoreductase subunit M (EC:1.6.5.3); K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3]
NADH:ubiquinone oxidoreductase subunit M n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002ED2363
Proton-translocating NADH-quinone oxidoreductase, chain M {ECO:0000313|EMBL:KFC69021.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_cont_500_bf_scaffold_2433_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5781..7211
DNA (1431bp) protein (477aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
proton-translocating NADH-quinone oxidoreductase subunit N; K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit N n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=NUON_BEII9
SCNpilot_cont_500_bf_scaffold_2433_8
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7288..7998
DNA (711bp) protein (237aa)
biotin--acetyl-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
Biotin/acetyl-CoA-carboxylase ligase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZYP0_STAND
Biotin/acetyl-CoA-carboxylase ligase {ECO:0000313|EMBL:ADH89152.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_500_bf_scaffold_2433_9
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7995..9671
DNA (1677bp) protein (559aa)
Putative hydrolase of the metallo-beta-lactamase superfamily n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z0C3_9RHIZ
Putative hydrolase of the metallo-beta-lactamase superfamily {ECO:0000313|EMBL:EIM29665.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
metallo-beta-lactamase superfamily hydrolase; K07021
SCNpilot_cont_500_bf_scaffold_2433_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9675..10841)
DNA (1167bp) protein (389aa)
Ribonuclease D {ECO:0000256|HAMAP-Rule:MF_01899}; Short=RNase D {ECO:0000256|HAMAP-Rule:MF_01899};; EC=3.1.13.5 {ECO:0000256|HAMAP-Rule:MF_01899};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ribonuclease D; K03684 ribonuclease D [EC:3.1.13.5]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036C9914
SCNpilot_cont_500_bf_scaffold_2433_11
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11002..12987
DNA (1986bp) protein (662aa)
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:EAV43765.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EAV43765.1};; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
aspS; aspartyl-tRNA ligase AspS (EC:6.1.1.12) rbh
Aspartate--tRNA ligase n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NTK6_9RHOB rbh
SCNpilot_cont_500_bf_scaffold_2433_12
Pseudovibrio sp. JE062, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12995..13750
DNA (756bp) protein (252aa)
Putative uncharacterized protein n=1 Tax=Pseudovibrio sp. JE062 RepID=B6YYC5_9RHOB
Putative uncharacterized protein {ECO:0000313|EMBL:EEA93486.1}; TaxID=439495 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. JE062.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2433_13
unknown

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comp(13754..13831)
DNA (78bp) protein (26aa)

This feature has no annotations

Displaying 13 items

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