ggKbase home page

SCNpilot_cont_500_bf_scaffold_376

Search features with annotation key words

Displaying items 1-30 of 198 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_376_1
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..263
DNA (261bp) protein (87aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMI8_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFG66699.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_376_2
Loktanella cinnabarina, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

388..627
DNA (240bp) protein (80aa)
Mobile element protein n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2Z410_9RHOB
Mobile element protein {ECO:0000313|EMBL:GAD55797.1}; TaxID=1337093 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella cinnabarina LL-001.;"
transposase IS3/IS911 family protein; K07497 putative transposase
SCNpilot_cont_500_bf_scaffold_376_3
Thioclava sp. 13D2W-2, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(611..1714)
DNA (1104bp) protein (368aa)
Putative succinyl-diaminopimelate desuccinylase n=1 Tax=Marinobacter sp. BSs20148 RepID=M1F6B3_9ALTE
Peptidase M20:peptidase M20 {ECO:0000313|EMBL:KFE36283.1}; TaxID=1317124 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. 13D2W-2.;"
dapE; succinyl-diaminopimelate desuccinylase
SCNpilot_cont_500_bf_scaffold_376_4
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1736..2818)
DNA (1083bp) protein (361aa)
hypothetical protein; K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30] rbh
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D984_BRAJP rbh
Uncharacterized protein {ECO:0000313|EMBL:BAL10175.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_500_bf_scaffold_376_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2811..4550)
DNA (1740bp) protein (580aa)
Uncharacterized protein n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4WXD0_RHOS5 rbh
Putative transmembrane component of ABC transporter {ECO:0000313|EMBL:AHK46275.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein; K02011 iron(III) transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_376_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4578..5639)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NL65_RHISP
Putative iron ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AHK46274.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein; K02012 iron(III) transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_376_7
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5694..6410)
DNA (717bp) protein (239aa)
GntR family transcriptional regulator n=1 Tax=Achromobacter piechaudii HLE RepID=J4J8Z0_9BURK
GntR family transcriptional regulator {ECO:0000313|EMBL:EJO33264.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
GntR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_376_8
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

6612..7913
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TG07_9CHLR rbh
Uncharacterized protein {ECO:0000313|EMBL:EFH88709.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_376_9
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

7924..8238
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TG08_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:EFH88710.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_376_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8974..9963
DNA (990bp) protein (330aa)
Putative amidohydrolase n=1 Tax=Rhodanobacter denitrificans RepID=M4NM80_9GAMM
putative amidohydrolase
Putative amidohydrolase {ECO:0000313|EMBL:AGG88831.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_376_11
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(10090..11106)
DNA (1017bp) protein (339aa)
NAD(P)H quinone oxidoreductase (EC:1.6.5.5)
Quinone oxidoreductase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M821_9RHIZ rbh
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
SCNpilot_cont_500_bf_scaffold_376_12
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11176..12249
DNA (1074bp) protein (358aa)
Response regulator n=1 Tax=Rhizobium sp. CF080 RepID=J2JP47_9RHIZ
AroM family protein {ECO:0000313|EMBL:CDN55768.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
LuxR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_376_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12377..16216
DNA (3840bp) protein (1280aa)
Hydantoin utilization protein A {ECO:0000313|EMBL:KFC70533.1}; EC=3.5.2.14 {ECO:0000313|EMBL:KFC70533.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
N-methylhydantoinase A (EC:3.5.2.9); K01469 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9]
Hydantoinase/oxoprolinase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZXJ9_9PROT rbh
SCNpilot_cont_500_bf_scaffold_376_14
bacterium YEK0313, Bacteria

Not on your lists

16259..17887
DNA (1629bp) protein (543aa)
Putative membrane protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z3H8_9RHIZ
OPT oligopeptide transporter protein {ECO:0000313|EMBL:CEJ15257.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
oligopeptide transporter OPT superfamily protein rbh
SCNpilot_cont_500_bf_scaffold_376_15
bacterium YEK0313, Bacteria

Not on your lists

17899..18576
DNA (678bp) protein (226aa)
Putative uncharacterized protein n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7TB21_ALCXX
Uncharacterized protein {ECO:0000313|EMBL:CEJ15259.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein; K14591 protein AroM
SCNpilot_cont_500_bf_scaffold_376_16
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(18781..19248)
DNA (468bp) protein (156aa)
Transcriptional regulator, AsnC family n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CT61_TRURR
AsnC family transcriptional regulator; K03718 Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ADI15524.1}; TaxID=649638 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Trueperaceae; Truepera.;" source="Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 /; RQ-24).;"
SCNpilot_cont_500_bf_scaffold_376_17
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

19416..20480
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Paenibacillus sp. PAMC 26794 RepID=UPI00030B4EC9
spermidine/putrescine-binding periplasmic protein; K02055 putative spermidine/putrescine transport system substrate-binding protein
Tax=RBG_16_Armatimonadetes_67_12_curated
SCNpilot_cont_500_bf_scaffold_376_18
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20564..21640
DNA (1077bp) protein (359aa)
spermidine/putrescine ABC transporter ATP-binding subunit; K11072 spermidine/putrescine transport system ATP-binding protein [EC:3.6.3.31]
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=POTA_RUBXD
Putrescine transport ATP-binding protein PotA {ECO:0000313|EMBL:CDP52049.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_cont_500_bf_scaffold_376_19
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21737..22528
DNA (792bp) protein (264aa)
Putative permease component of ABC transporter n=1 Tax=Paenibacillus sp. Aloe-11 RepID=H6CPY3_9BACL
Spermidine Putrescine ABC transporter permease com ponent PotB {ECO:0000313|EMBL:CDP52048.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ABC spermidine/putrescine transporter permease; K02054 putative spermidine/putrescine transport system permease protein
SCNpilot_cont_500_bf_scaffold_376_20
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22528..25062
DNA (2535bp) protein (845aa)
Peptidase, M28 family n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K7A3_SACES rbh
Uncharacterized protein {ECO:0000313|EMBL:KFL27249.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Peptidase, M28 family rbh
SCNpilot_cont_500_bf_scaffold_376_21
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25084..25854
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K4F2_SACES
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CDP52045.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_376_22
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25859..26881
DNA (1023bp) protein (341aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
2-dehydropantoate 2-reductase n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K2C6_SACES rbh
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_376_23
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27177..28331)
DNA (1155bp) protein (385aa)
NnrS protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCU5_HYPSM rbh
nnrS; NnrS protein; K07234 uncharacterized protein involved in response to NO rbh
NnrS protein {ECO:0000313|EMBL:CCB66468.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_cont_500_bf_scaffold_376_24
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28390..28866)
DNA (477bp) protein (159aa)
Putative integral membrane protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCU4_HYPSM
integral membrane protein
Putative integral membrane protein {ECO:0000313|EMBL:CCB66467.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_cont_500_bf_scaffold_376_25
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28909..29478)
DNA (570bp) protein (190aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SN89_NITWN
Uncharacterized protein {ECO:0000313|EMBL:CDX53679.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_376_26
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29623..29928)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCU3_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB66466.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_cont_500_bf_scaffold_376_27
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29937..30839)
DNA (903bp) protein (301aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
PpiC-type peptidyl-prolyl cis-trans isomerase; K03769 peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCU2_HYPSM
SCNpilot_cont_500_bf_scaffold_376_28
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30836..31609)
DNA (774bp) protein (258aa)
Nitrate reductase 1, gamma (Cytochrome b(NR)) subunit {ECO:0000313|EMBL:CDX53666.1}; EC=1.7.99.4 {ECO:0000313|EMBL:CDX53666.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
nitrate reductase subunit gamma protein; K00374 nitrate reductase 1, gamma subunit [EC:1.7.99.4] rbh
Nitrate reductase gamma subunit protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HWU6_AZOC5 rbh
SCNpilot_cont_500_bf_scaffold_376_29
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31624..32328)
DNA (705bp) protein (235aa)
Molybdenum-cofactor-assembly chaperone subunit (Delta subunit) of nitrate reductase 1 {ECO:0000313|EMBL:CDX53661.1}; EC=1.7.99.4 {ECO:0000313|EMBL:CDX53661.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Nitrate reductase molybdenum cofactor assembly chaperone NarJ n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCU0_HYPSM
narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ; K00373 nitrate reductase 1, delta subunit
SCNpilot_cont_500_bf_scaffold_376_30
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32328..33854)
DNA (1527bp) protein (509aa)
Nitrate reductase 1, beta (Fe-S) subunit {ECO:0000313|EMBL:CDX53658.1}; EC=1.7.99.4 {ECO:0000313|EMBL:CDX53658.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
narH; nitrate reductase subunit beta (EC:1.7.99.4); K00371 nitrate reductase 1, beta subunit [EC:1.7.99.4] rbh
Nitrate reductase, beta subunit n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCT9_HYPSM rbh
Displaying items 1-30 of 198 in total

View Taxonomy