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SCNpilot_cont_500_bf_scaffold_632

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Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_632_trna_1
unknown

Not on your lists

comp(1499..1571)
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_632_1
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1646..2656
DNA (1011bp) protein (337aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
RluA family pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Pseudouridine synthase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUE3_9RHIZ
SCNpilot_cont_500_bf_scaffold_632_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2948..3862
DNA (915bp) protein (305aa)
RNA polymerase sigma 70 n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003086CF8
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
RNA polymerase factor sigma-32; K03089 RNA polymerase sigma-32 factor
SCNpilot_cont_500_bf_scaffold_632_3
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4043..4414
DNA (372bp) protein (124aa)
Glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein 22 n=1 Tax=Achromobacter piechaudii HLE RepID=J4QX60_9BURK
Drug:proton antiporter {ECO:0000313|EMBL:ETR77316.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein 22
SCNpilot_cont_500_bf_scaffold_632_4
bacterium YEK0313, Bacteria

Not on your lists

comp(4463..5641)
DNA (1179bp) protein (393aa)
Diguanylate cyclase n=2 Tax=Methylobacterium extorquens RepID=H1KR52_METEX
Putative diguanylate cyclase YdaM {ECO:0000313|EMBL:CEJ13776.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
diguanylate cyclase
SCNpilot_cont_500_bf_scaffold_632_5
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5796..6995)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IPM6_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFG70079.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
SCNpilot_cont_500_bf_scaffold_632_6
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7023..8315)
DNA (1293bp) protein (431aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
adenylosuccinate synthetase (EC:6.3.4.4); K01939 adenylosuccinate synthase [EC:6.3.4.4]
adenylosuccinate synthetase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E869C7
SCNpilot_cont_500_bf_scaffold_632_7
Hyphomonas adhaerens, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8411..9412)
DNA (1002bp) protein (334aa)
Putative threonine-phosphate decarboxylase CobC n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C211_HYPNA rbh
Putative threonine-phosphate decarboxylase CobC {ECO:0000313|EMBL:KCZ83164.1}; TaxID=1280949 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas adhaerens MHS-3.;"
putative threonine-phosphate decarboxylase CobC; K02225 cobalamin biosynthetic protein CobC rbh
SCNpilot_cont_500_bf_scaffold_632_8
Mesorhizobium sp. LNJC386A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9416..10456)
DNA (1041bp) protein (347aa)
UPI0003CE77EF related cluster n=1 Tax=unknown RepID=UPI0003CE77EF
Luciferase {ECO:0000313|EMBL:ESY34802.1}; TaxID=1287270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC386A00.;"
N5,N10-methylenetetrahydromethanopterin reductase
SCNpilot_cont_500_bf_scaffold_632_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10558..11631)
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8U2Z1_9PROT rbh
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_cont_500_bf_scaffold_632_10
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11859..12887)
DNA (1029bp) protein (343aa)
Periplasmic binding protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UJD6_METS4 rbh
FepB protein {ECO:0000313|EMBL:BAQ45684.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_632_11
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12975..13721)
DNA (747bp) protein (249aa)
transcriptional regulator n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E34A56 rbh
hypothetical protein
Probable transcriptional regulatory protein OCAR_7305/OCA5_c08120 {ECO:0000255|HAMAP-Rule:MF_00693}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_632_12
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13814..14725)
DNA (912bp) protein (304aa)
Drug/metabolite transporter permease n=1 Tax=Oceanibaculum indicum P24 RepID=K2KEN3_9PROT
Drug/metabolite transporter permease {ECO:0000313|EMBL:EKE75785.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_632_13
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14842..15624
DNA (783bp) protein (261aa)
glutamine amidotransferase; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
GMP synthase family protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTW5_9RHIZ
Glutamine amidotransferase {ECO:0000313|EMBL:KFG70082.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
SCNpilot_cont_500_bf_scaffold_632_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15751..17433
DNA (1683bp) protein (561aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037E8F37
Iron-sulfur cluster assembly protein {ECO:0000313|EMBL:KFC74019.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_632_15
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17434..18195)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UFQ2_METS4
hypothetical protein; K07090
Uncharacterized protein {ECO:0000313|EMBL:ACA16786.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_500_bf_scaffold_632_16
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18203..19468)
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036CA311 rbh
Major facilitator transporter {ECO:0000313|EMBL:KGM35282.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
drug resistance transporter; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein rbh
SCNpilot_cont_500_bf_scaffold_632_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19608..20135
DNA (528bp) protein (176aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ruvC; Holliday junction resolvase; K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=RUVC_RHOP5
SCNpilot_cont_500_bf_scaffold_632_18
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20114..20971)
DNA (858bp) protein (286aa)
Glycine/D-amino acid oxidase, deaminating n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VDG3_9RHIZ
Glycine/D-amino acid oxidase, deaminating {ECO:0000313|EMBL:EJN04002.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_632_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20929..21348)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAV5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80601.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
FAD dependent oxidoreductase
SCNpilot_cont_500_bf_scaffold_632_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21401..21982)
DNA (582bp) protein (194aa)
methylated-DNA--protein-cysteine methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI000376693B
Methylated-DNA-[protein]-cysteine S-methyltransferase {ECO:0000313|EMBL:KFC73946.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_cont_500_bf_scaffold_632_21
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22055..22690)
DNA (636bp) protein (212aa)
Putative transcriptional regulator protein, TetR family n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TXI7_9RHIZ
Putative transcriptional regulator protein, TetR family {ECO:0000313|EMBL:ENN85119.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
transcriptional regulator
SCNpilot_cont_500_bf_scaffold_632_22
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23046..23540)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A2F6_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH89619.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_500_bf_scaffold_632_23
bacterium YEK0313, Bacteria

Not on your lists

23601..24317
DNA (717bp) protein (239aa)
lysS; lysyl-tRNA synthetase (EC:6.1.1.6); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E25D9F
B3/4 domain protein {ECO:0000313|EMBL:CEJ14008.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_500_bf_scaffold_632_24
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24391..25398
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DD1385 rbh
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:EIM27940.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ArsR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_632_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25398..26321
DNA (924bp) protein (308aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
5,10-methylenetetrahydrofolate reductase; K00297 methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20]
Methylenetetrahydrofolate reductase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YVE9_9RHIZ
SCNpilot_cont_500_bf_scaffold_632_26
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26382..30113
DNA (3732bp) protein (1244aa)
metH; B12-dependent methionine synthase; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] rbh
5-methyltetrahydrofolate--homocysteine methyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YVF0_9RHIZ rbh
5-methyltetrahydrofolate--homocysteine methyltransferase {ECO:0000313|EMBL:EIM27942.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_cont_500_bf_scaffold_632_27
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30324..31394
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0S881_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD90408.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_632_28
bacterium YEK0313, Bacteria

Not on your lists

31586..33157
DNA (1572bp) protein (524aa)
Dipeptide-binding protein DppE {ECO:0000313|EMBL:CEJ09893.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein id=4153832 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
oligopeptide ABC transporter periplasmic oligopeptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_632_29
bacterium YEK0313, Bacteria

Not on your lists

33490..34080
DNA (591bp) protein (197aa)
Oligopeptide ABC transporter, permease protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LU47_RUEPO
Glutathione transport system permease protein GsiC {ECO:0000313|EMBL:CEJ09894.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
oligopeptide ABC transporter permease; K02033 peptide/nickel transport system permease protein
Displaying items 1-30 of 91 in total

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