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SCNpilot_cont_500_bf_scaffold_638

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Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_638_1
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..277
DNA (276bp) protein (92aa)
Conjugative transfer protein TrbE n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2Z9P0_9CAUL
Conjugal transfer ATPase TrbE {ECO:0000313|EMBL:AJE47006.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
SCNpilot_cont_500_bf_scaffold_638_2
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

674..988
DNA (315bp) protein (105aa)
Conjugative transfer protein TrbJ n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2YRW1_9CAUL
Conjugative transfer protein TrbJ {ECO:0000313|EMBL:GAD58186.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
Conjugal transfer protein
SCNpilot_cont_500_bf_scaffold_638_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1003..1290
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1L6_9RHIZ
Conjugative transfer region protein TrbK {ECO:0000313|EMBL:EYR84299.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_638_4
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1293..1532
DNA (240bp) protein (80aa)
conjugal transfer protein TrbL n=1 Tax=Hoeflea sp. 108 RepID=UPI00037D243A
Conjugal transfer protein TrbL {ECO:0000313|EMBL:GAJ29879.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_cont_500_bf_scaffold_638_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1496..2602
DNA (1107bp) protein (369aa)
P-type conjugative transfer protein TrbL n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX15_9RHIZ
P-type conjugative transfer protein TrbL {ECO:0000313|EMBL:EYR84300.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_cont_500_bf_scaffold_638_6
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2599..3288
DNA (690bp) protein (230aa)
Conjugative transfer protein TrbF n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U3AKG6_9CAUL rbh
Conjugative transfer protein TrbF {ECO:0000313|EMBL:GAD58189.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5 rbh
SCNpilot_cont_500_bf_scaffold_638_7
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3294..3602)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003663D8E
Uncharacterized protein {ECO:0000313|EMBL:GAJ29881.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_638_8
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3675..4619
DNA (945bp) protein (315aa)
conjugative transfer protein TrbG n=1 Tax=Hoeflea sp. 108 RepID=UPI00035DD775 rbh
Secretion system type IV conjugal transfer protein TrbG {ECO:0000313|EMBL:GAJ29882.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
SCNpilot_cont_500_bf_scaffold_638_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4616..5752
DNA (1137bp) protein (379aa)
conjugal transfer protein TraI n=1 Tax=Hoeflea sp. 108 RepID=UPI0003749378 rbh
Putative conjugal transfer protein TrbI {ECO:0000313|EMBL:EYR84304.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10 rbh
SCNpilot_cont_500_bf_scaffold_638_10
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5755..5976
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000363EC2D
Uncharacterized protein {ECO:0000313|EMBL:GAJ29884.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_638_11
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6112..6429
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000382B0C8
Uncharacterized protein {ECO:0000313|EMBL:GAJ29885.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_638_12
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6426..6779
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000363864C
Uncharacterized protein {ECO:0000313|EMBL:GAD58194.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_638_13
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6776..7174
DNA (399bp) protein (133aa)
transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI0003717645
Transcriptional regulator {ECO:0000313|EMBL:KFL26561.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_638_14
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7171..8844
DNA (1674bp) protein (558aa)
Resolvase domain n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VP48_RHOPX
Resolvase {ECO:0000313|EMBL:GAJ29888.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
resolvase domain-containing protein
SCNpilot_cont_500_bf_scaffold_638_trna_1
unknown

Not on your lists

comp(8803..8876)
DNA (74bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_638_15

Not on your lists

comp(8908..9492)
DNA (585bp) protein (195aa)
Adenylate cyclase 3 n=1 Tax=uncultured organism RepID=Q1EHX6_9ZZZZ
Adenylate cyclase 3 {ECO:0000313|EMBL:CAK32563.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
adenylate class-3/4/guanylyl cyclase
SCNpilot_cont_500_bf_scaffold_638_16
bacterium YEK0313, Bacteria

Not on your lists

9861..11684
DNA (1824bp) protein (608aa)
GTP-binding protein TypA n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003010C29 rbh
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:CEJ10630.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
GTP-binding protein TypA; K06207 GTP-binding protein rbh
SCNpilot_cont_500_bf_scaffold_638_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12079..13410
DNA (1332bp) protein (444aa)
polyhydroxyalkanoate depolymerase; K05973 poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031D2679
Polyhydroxyalkanoate depolymerase, intracellular {ECO:0000313|EMBL:KFC70718.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_cont_500_bf_scaffold_638_18
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13407..13889
DNA (483bp) protein (161aa)
GCN5 family acetyltransferase n=1 Tax=Sinorhizobium medicae RepID=UPI000379E9D1
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABR61111.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_cont_500_bf_scaffold_638_19
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13996..14682
DNA (687bp) protein (229aa)
Putative transcriptional regulator protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PSE4_RHIE6
transcriptional regulator protein
Putative transcriptional regulator protein {ECO:0000313|EMBL:ACE90066.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_cont_500_bf_scaffold_638_20
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14762..15505
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WSM0_9BRAD
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ48317.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
hypothetical protein; K07043
SCNpilot_cont_500_bf_scaffold_638_21
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15557..16753
DNA (1197bp) protein (399aa)
Drug resistance transporter, Bcr/CflA subfamily n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZB8_9RHIZ
Multidrug transporter {ECO:0000313|EMBL:KFG68054.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
Bcr/CflA subfamily drug resistance transporter; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein
SCNpilot_cont_500_bf_scaffold_638_22
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16760..18886)
DNA (2127bp) protein (709aa)
Penicillin-binding protein, 1A family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZC0_9RHIZ rbh
Penicillin-binding protein {ECO:0000313|EMBL:KFG68052.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
1A family penicillin-binding protein rbh
SCNpilot_cont_500_bf_scaffold_638_23
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18996..19613)
DNA (618bp) protein (206aa)
Protein-disulfide isomerase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYV6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFG68103.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
DSBA oxidoreductase
SCNpilot_cont_500_bf_scaffold_638_24
bacterium YEK0313, Bacteria

Not on your lists

comp(19620..20414)
DNA (795bp) protein (265aa)
enoyl-(acyl carrier protein) reductase; K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9]
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07V20_RHOP5
Enoyl-[acyl-carrier-protein] reductase [NADH] FabI {ECO:0000313|EMBL:CEJ15084.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_500_bf_scaffold_638_25
bacterium YEK0313, Bacteria

Not on your lists

comp(20539..21765)
DNA (1227bp) protein (409aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41); K00647 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
3-oxoacyl-[acyl-carrier-protein] synthase 1 n=3 Tax=Oligotropha carboxidovorans RepID=B6JCR3_OLICO
3-oxoacyl-[acyl-carrier-protein] synthase 1 {ECO:0000313|EMBL:CEJ15085.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_500_bf_scaffold_638_26
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21837..22349)
DNA (513bp) protein (171aa)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064161}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064166};; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA {ECO:0000256|HAMAP-Rule:MF_00405}; Beta-hydroxydecanoyl thioester dehydrase {ECO:0000256|HAMAP-Rule:MF_00405}; Trans-2-decenoyl-[acyl-carrier-protein] isomerase {ECO:0000256|HAMAP-Rule:MF_00405}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacte
3-hydroxydecanoyl-ACP dehydratase (EC:4.2.1.60); K01716 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.60]
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYV2_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_638_27
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22493..22978
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036CF8CE
Fe2+/Zn2+ uptake regulation protein; K09826 Fur family transcriptional regulator, iron response regulator
Putative Fe2+/Zn2+ uptake regulation protein {ECO:0000313|EMBL:BAF86365.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_638_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23102..23632)
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Methylocystis rosea RepID=UPI00037FD25C
D-lactate dehydrogenase (Cytochrome) {ECO:0000313|EMBL:KFC75612.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_638_29
bacterium YEK0313, Bacteria

Not on your lists

23811..24809
DNA (999bp) protein (333aa)
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; K00015 glyoxylate reductase [EC:1.1.1.26] rbh
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, putative n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IYJ2_POLGS rbh
Glycerate dehydrogenase {ECO:0000313|EMBL:CEJ16271.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Displaying items 1-30 of 54 in total

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