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SCNpilot_cont_500_bf_scaffold_718

Search features with annotation key words

Displaying items 1-30 of 92 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_718_1
Bartonella tamiae, Bartonella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..397
DNA (396bp) protein (132aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1094558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella.;" source="Bartonella tamiae Th239.;"
truA; tRNA pseudouridine synthase A; K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
tRNA pseudouridine synthase A n=2 Tax=Bartonella tamiae RepID=J0ZW28_9RHIZ
SCNpilot_cont_500_bf_scaffold_718_2
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(467..1630)
DNA (1164bp) protein (388aa)
dapE; N-succinyl-diaminopimelate deacylase (EC:3.5.1.18); K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] rbh
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082787}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
succinyl-diaminopimelate desuccinylase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00034907C6 rbh
SCNpilot_cont_500_bf_scaffold_718_3
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1640..2482)
DNA (843bp) protein (281aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013419}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013404};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC:2.3.1.117); K00674 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117]
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUN9_9RHIZ
SCNpilot_cont_500_bf_scaffold_718_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2587..3105)
DNA (519bp) protein (173aa)
Cysteine dioxygenase type I n=1 Tax=Methylobacterium sp. GXF4 RepID=I9WWP3_9RHIZ
Cysteine dioxygenase type I {ECO:0000313|EMBL:KFC75513.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cysteine dioxygenase type I
SCNpilot_cont_500_bf_scaffold_718_5
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3240..3710
DNA (471bp) protein (157aa)
ArsR family transcriptional regulator n=1 Tax=Roseomonas sp. B5 RepID=UPI00031D1DA9
ArsR family transcriptional regulator {ECO:0000313|EMBL:KGM35038.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
transcriptional regulator, AsnC/Lrp family
SCNpilot_cont_500_bf_scaffold_718_6
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3731..4333)
DNA (603bp) protein (201aa)
recombinase RecR n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030F8727 rbh
recR; recombination protein RecR; K06187 recombination protein RecR rbh
Recombination protein RecR {ECO:0000255|HAMAP-Rule:MF_00017}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_500_bf_scaffold_718_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4453..4773)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003747848
Nucleoid-associated protein FG93_02593 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K09747 hypothetical protein
SCNpilot_cont_500_bf_scaffold_718_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4789..6651)
DNA (1863bp) protein (621aa)
Putative DNA polymerase III (Gamma and tau subunits) {ECO:0000313|EMBL:KFC70835.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KFC70835.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
DNA polymerase III subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] rbh
DNA polymerase III subunit gamma/tau n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000347940A
SCNpilot_cont_500_bf_scaffold_718_9
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6960..7886
DNA (927bp) protein (309aa)
NAD(+) diphosphatase (EC:3.6.1.22); K03426 NAD+ diphosphatase [EC:3.6.1.22]
NAD(+) diphosphatase {ECO:0000313|EMBL:ADH91740.1}; EC=3.6.1.22 {ECO:0000313|EMBL:ADH91740.1};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
NAD(+) diphosphatase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A3W3_STAND
SCNpilot_cont_500_bf_scaffold_718_10
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7890..8450
DNA (561bp) protein (187aa)
Putative acetyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YM54_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFG66843.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_718_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8637..9047
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ICD0_XANP2
Uncharacterized protein {ECO:0000313|EMBL:KFC66821.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_718_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9072..10448)
DNA (1377bp) protein (459aa)
Putative transcriptional regulator, GntR family n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ICC9_XANP2 rbh
Transcriptional regulatory protein {ECO:0000313|EMBL:KFC66820.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
GntR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_718_13
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10528..11130)
DNA (603bp) protein (201aa)
adenylattransferase (EC:2.3.1.1)
Gcn5-related n-acetyltransferase n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CG99_9RHIZ
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:CCH77938.1}; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
SCNpilot_cont_500_bf_scaffold_718_14
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11164..12012)
DNA (849bp) protein (283aa)
Prephenate dehydratase {ECO:0000313|EMBL:KFG67440.1}; EC=4.2.1.51 {ECO:0000313|EMBL:KFG67440.1};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
pheA; prephenate dehydratase (EC:4.2.1.51); K04518 prephenate dehydratase [EC:4.2.1.51]
prephenate dehydratase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031F5B5A rbh
SCNpilot_cont_500_bf_scaffold_718_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12063..12803)
DNA (741bp) protein (247aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
3-deoxy-D-manno-octulosonate cytidylyltransferase; K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPD1_9RHIZ
SCNpilot_cont_500_bf_scaffold_718_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12922..13464
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DD2115
Cytochrome c, class I {ECO:0000313|EMBL:KFC75474.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cytochrome c; K08738 cytochrome c
SCNpilot_cont_500_bf_scaffold_718_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13594..14205)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030C79D0
Uncharacterized protein {ECO:0000313|EMBL:KFC66864.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ErfK/YbiS/YcfS/YnhG family protein
SCNpilot_cont_500_bf_scaffold_718_18
bacterium YEK0313, Bacteria

Not on your lists

14367..15251
DNA (885bp) protein (295aa)
alpha/beta hydrolase; K01561 haloacetate dehalogenase [EC:3.8.1.3] rbh
Alpha/beta hydrolase fold n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NI12_ROSCS rbh
Fluoroacetate dehalogenase {ECO:0000313|EMBL:CEJ15746.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_500_bf_scaffold_718_19
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15248..15571
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Paenibacillus mucilaginosus K02 RepID=I0BD70_9BACL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFH60317.1}; TaxID=997761 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus mucilaginosus K02.;"
SCNpilot_cont_500_bf_scaffold_718_20
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15589..16668
DNA (1080bp) protein (360aa)
Tartrate dehydrogenase/ tartrate decarboxylase/ D-malic enzyme {ECO:0000313|EMBL:EGP08115.1}; EC=1.1.1.83 {ECO:0000313|EMBL:EGP08115.1};; EC=1.1.1.93 {ECO:0000313|EMBL:EGP08115.1};; EC=4.1.1.73 {ECO:0000313|EMBL:EGP08115.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
tartrate dehydrogenase (EC:1.1.1.93); K07246 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Tartrate dehydrogenase/ tartrate decarboxylase/ D-malic enzyme n=2 Tax=Bradyrhizobiaceae RepID=F7QMB2_9BRAD
SCNpilot_cont_500_bf_scaffold_718_21
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16749..17483
DNA (735bp) protein (245aa)
Integral membrane protein TerC n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IHS6_XANP2
integral membrane protein TerC
Integral membrane protein TerC {ECO:0000313|EMBL:ABS67569.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_500_bf_scaffold_718_22
bacterium YEK0313, Bacteria

Not on your lists

17517..18203
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000373A0DA
Integral membrane protein TerC family protein {ECO:0000313|EMBL:CEJ15752.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
integral membrane protein TerC
SCNpilot_cont_500_bf_scaffold_718_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18441..18911
DNA (471bp) protein (157aa)
Transcriptional regulator, AsnC family n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VE42_RHOPX
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:KFC72845.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
AsnC family transcriptional regulator; K05800 Lrp/AsnC family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_718_24
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18926..19837)
DNA (912bp) protein (304aa)
Signal protein PDZ n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FLL1_9RHIZ
Signal protein PDZ {ECO:0000313|EMBL:ESX81011.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
serine protease
SCNpilot_cont_500_bf_scaffold_718_25
bacterium YEK0313, Bacteria

Not on your lists

comp(20053..21168)
DNA (1116bp) protein (372aa)
NADH:flavin oxidoreductase; K10680 N-ethylmaleimide reductase [EC:1.-.-.-] rbh
NADH:flavin oxidoreductase/NADH oxidase n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EJ90_METSB rbh
N-ethylmaleimide reductase {ECO:0000313|EMBL:CEJ16110.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_500_bf_scaffold_718_26
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21355..22107)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J1EI74_9BURK
Glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein {ECO:0000313|EMBL:AJZ62361.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_718_27
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22253..23773)
DNA (1521bp) protein (507aa)
permease n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037864D1
Permease {ECO:0000313|EMBL:KKC37351.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_718_28
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23773..24522)
DNA (750bp) protein (250aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YD07_9BRAD
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:EIG60842.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
ABC transporter ATP-binding protein
SCNpilot_cont_500_bf_scaffold_718_trna_1
unknown

Not on your lists

comp(24651..24724)
DNA (74bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_718_29
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24865..25794
DNA (930bp) protein (310aa)
acetoin utilization protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI0003817E51
histone deacetylase superfamily protein
Histone deacetylase superfamily {ECO:0000313|EMBL:ACA14958.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
Displaying items 1-30 of 92 in total

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