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SCNpilot_cont_500_bf_scaffold_744

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_744_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(186..1088)
DNA (903bp) protein (301aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC66898.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_cont_500_bf_scaffold_744_2
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1254..2000)
DNA (747bp) protein (249aa)
Surfeit locus 1 family protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BAI6_9RHIZ
Surfeit locus 1 family protein
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_cont_500_bf_scaffold_744_3
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1997..2362)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E510BA
cytochrome c oxidase subunit III
Cytochrome c oxidase, subunit III {ECO:0000313|EMBL:ADZ71815.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_500_bf_scaffold_744_4
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2480..3997)
DNA (1518bp) protein (506aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hisS; histidyl-tRNA synthetase; K01892 histidyl-tRNA synthetase [EC:6.1.1.21] rbh
Histidyl-tRNA synthetase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPI4_9RHIZ
SCNpilot_cont_500_bf_scaffold_744_5
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4177..5952
DNA (1776bp) protein (592aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003648A23
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:ACA16328.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_500_bf_scaffold_744_6
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5989..7152)
DNA (1164bp) protein (388aa)
membrane protease subunit, stomatin/prohibitin n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003634307 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AHY49560.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
SCNpilot_cont_500_bf_scaffold_744_trna_2
unknown

Not on your lists

comp(7509..7581)
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_744_trna_1
unknown

Not on your lists

comp(7582..7654)
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_744_7
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7930..9264)
DNA (1335bp) protein (445aa)
beta alanine--pyruvate transaminase; K00822 beta-alanine--pyruvate transaminase [EC:2.6.1.18]
omega amino acid--pyruvate aminotransferase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031C4F9F rbh
Aminotransferase class-III {ECO:0000313|EMBL:ACL59327.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_500_bf_scaffold_744_8
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9432..9725
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A3T3_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH91710.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_500_bf_scaffold_744_9
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9731..11320
DNA (1590bp) protein (530aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A3T3_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH91710.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_500_bf_scaffold_744_10
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11400..12704
DNA (1305bp) protein (435aa)
diguanylate phosphodiesterase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037932A0
Cyclic-di-GMP phosphodiesterase, flagellum assembly factor TipF {ECO:0000313|EMBL:ERF83198.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
diguanylate phosphodiesterase; K13593 cyclic-di-GMP phosphodiesterase, flagellum assembly factor TipF
SCNpilot_cont_500_bf_scaffold_744_11
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12791..13651
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000312AD3A
HAD family hydrolase
HAD-superfamily hydrolase, subfamily IIA {ECO:0000313|EMBL:ABS67089.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_500_bf_scaffold_744_12
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13690..14073)
DNA (384bp) protein (128aa)
Response regulator receiver protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UDG3_METS4
response regulator receiver protein; K03413 two-component system, chemotaxis family, response regulator CheY
Response regulator receiver protein {ECO:0000313|EMBL:ACA16684.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_500_bf_scaffold_744_13
bacterium YEK0313, Bacteria

Not on your lists

14222..14689
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000365F90A
(R)-specific enoyl-CoA hydratase {ECO:0000313|EMBL:CEJ15453.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
MaoC-like dehydratase
SCNpilot_cont_500_bf_scaffold_744_14
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14893..17982
DNA (3090bp) protein (1030aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
ileS; isoleucyl-tRNA synthetase; K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5] rbh
isoleucyl-tRNA synthase n=1 Tax=Methyloferula stellata RepID=UPI0003738698
SCNpilot_cont_500_bf_scaffold_744_15
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17979..18470
DNA (492bp) protein (164aa)
lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
Lipoprotein signal peptidase {ECO:0000255|HAMAP-Rule:MF_00161}; EC=3.4.23.36 {ECO:0000255|HAMAP-Rule:MF_00161};; Prolipoprotein signal peptidase {ECO:0000255|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000255|HAMAP-Rule:MF_00161}; Short=SPase II {ECO:0000255|HAMAP-Rule:MF_00161};; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000304E0D7
SCNpilot_cont_500_bf_scaffold_744_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18535..19185
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037874EC
Alcohol dehydrogenase {ECO:0000313|EMBL:KFC75323.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_744_17
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19296..20588
DNA (1293bp) protein (431aa)
Peptidase M16 domain-containing protein n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CM32_9RHIZ
Peptidase M16 domain-containing protein {ECO:0000313|EMBL:EIZ84555.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
peptidase M16 domain-containing protein rbh
SCNpilot_cont_500_bf_scaffold_744_18
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20605..21885
DNA (1281bp) protein (427aa)
zinc protease n=1 Tax=Methylosinus sp. LW4 RepID=UPI000363A421
peptidase M16 domain-containing protein
Peptidase M16 domain protein {ECO:0000313|EMBL:ACB94653.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_500_bf_scaffold_744_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22041..23357
DNA (1317bp) protein (439aa)
Glucose-6-phosphate isomerase {ECO:0000256|RuleBase:RU000612, ECO:0000256|SAAS:SAAS00031329}; EC=5.3.1.9 {ECO:0000256|RuleBase:RU000612, ECO:0000256|SAAS:SAAS00031329};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
glucose-6-phosphate isomerase; K01810 glucose-6-phosphate isomerase [EC:5.3.1.9] rbh
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D8EDAC rbh
SCNpilot_cont_500_bf_scaffold_744_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23369..23977)
DNA (609bp) protein (203aa)
UPF0301 protein RPE_0714 n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07TR3_RHOP5
UPF0301 protein FG93_00298 {ECO:0000256|HAMAP-Rule:MF_00758}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K07735 putative transcriptional regulator
SCNpilot_cont_500_bf_scaffold_744_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24103..24966
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036DFD43
Uncharacterized protein {ECO:0000313|EMBL:KFC75280.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_744_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25040..25528
DNA (489bp) protein (163aa)
Redoxin domain protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IHL7_METNO
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Malallergen {ECO:0000313|EMBL:KFC75281.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
redoxin domain-containing protein
SCNpilot_cont_500_bf_scaffold_744_23
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25532..25996)
DNA (465bp) protein (155aa)
ribonuclease H; K03469 ribonuclease HI [EC:3.1.26.4]
RNaseH ribonuclease n=1 Tax=Xanthobacteraceae RepID=UPI00036C6451
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_500_bf_scaffold_744_24
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26009..26974)
DNA (966bp) protein (322aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085804}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00301};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00301};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085809};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
homoserine kinase (EC:2.7.1.39); K02204 homoserine kinase type II [EC:2.7.1.39]
homoserine kinase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003161BCD rbh
SCNpilot_cont_500_bf_scaffold_744_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26975..27937)
DNA (963bp) protein (321aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003819D09
SCNpilot_cont_500_bf_scaffold_744_26
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28132..29496
DNA (1365bp) protein (455aa)
glutamate--cysteine ligase (EC:6.3.2.2); K01919 glutamate--cysteine ligase [EC:6.3.2.2] rbh
Glutamate--cysteine ligase {ECO:0000313|EMBL:ACB95868.1}; EC=6.3.2.2 {ECO:0000313|EMBL:ACB95868.1};; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
Glutamate--cysteine ligase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IH83_BEII9 rbh
SCNpilot_cont_500_bf_scaffold_744_27
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29541..30884)
DNA (1344bp) protein (448aa)
NADH dehydrogenase; K03885 NADH dehydrogenase [EC:1.6.99.3] rbh
NADH dehydrogenase, FAD-containing subunit n=1 Tax=Microvirga sp. WSM3557 RepID=I4YT68_9RHIZ rbh
NADH dehydrogenase, FAD-containing subunit {ECO:0000313|EMBL:EIM27160.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_cont_500_bf_scaffold_744_28
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30895..31839)
DNA (945bp) protein (315aa)
Transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPX6_9RHIZ
LysR family transcriptional regulator {ECO:0000313|EMBL:KFG67315.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
LysR family transcriptional regulator
Displaying items 1-30 of 34 in total

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