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SCNpilot_cont_500_bf_scaffold_862

Search features with annotation key words

Displaying items 1-30 of 95 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_862_1
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1186)
DNA (1185bp) protein (395aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
F0F1 ATP synthase subunit alpha (EC:3.4.21.68); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]
ATP synthase subunit alpha n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7YPG4_9RHIZ
SCNpilot_cont_500_bf_scaffold_862_2
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1186..1746)
DNA (561bp) protein (187aa)
ATP synthase F1 subunit delta; K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14]
ATP synthase subunit delta n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00036663F4
ATP synthase subunit delta {ECO:0000255|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000255|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000255|HAMAP-Rule:MF_01416}; Short=F-ATPase subunit delta {ECO:0000255|HAMAP-Rule:MF_01416};; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
SCNpilot_cont_500_bf_scaffold_862_3
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2152..3609
DNA (1458bp) protein (486aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002D6F8DF rbh
Uncharacterized protein {ECO:0000313|EMBL:BAR63365.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_862_4
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3606..5576
DNA (1971bp) protein (657aa)
hypothetical protein; K00694 cellulose synthase (UDP-forming) [EC:2.4.1.12] rbh
cellulose synthase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000377D382 rbh
Cellulose synthase catalytic subunit {ECO:0000313|EMBL:BAR63626.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
SCNpilot_cont_500_bf_scaffold_862_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5608..7005)
DNA (1398bp) protein (466aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Dihydrolipoyl dehydrogenase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IG90_BEII9
SCNpilot_cont_500_bf_scaffold_862_6
Actibacterium mucosum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7161..8264
DNA (1104bp) protein (368aa)
ndaD; D-aminoacylase (EC:3.5.1.81); K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81]
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI00035D2BB8
Uncharacterized protein {ECO:0000313|EMBL:KAJ56515.1}; TaxID=1454373 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium mucosum KCTC 23349.;"
SCNpilot_cont_500_bf_scaffold_862_7
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8273..8668
DNA (396bp) protein (132aa)
Conserved uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F3F5_SPHCR
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
SCNpilot_cont_500_bf_scaffold_862_8
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8831..9553)
DNA (723bp) protein (241aa)
Uncharacterized protein {ECO:0000313|EMBL:KGF67205.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
SCNpilot_cont_500_bf_scaffold_862_9
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9641..10045)
DNA (405bp) protein (135aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HL69_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK58553.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_862_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10125..11414)
DNA (1290bp) protein (430aa)
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC=2.3.1.61;; 2-oxoglutarate dehydrogenase complex component E2 {ECO:0000256|RuleBase:RU361138}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dihydrolipoamide succinyltransferase (EC:2.3.1.61); K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
dihydrolipoamide succinyltransferase n=1 Tax=Afipia birgiae RepID=UPI000307DB29
SCNpilot_cont_500_bf_scaffold_862_11
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11491..14358)
DNA (2868bp) protein (956aa)
sucA; 2-oxoglutarate dehydrogenase E1 component; K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
2-oxoglutarate dehydrogenase, E1 subunit {ECO:0000313|EMBL:ACA16626.1}; EC=1.2.4.2 {ECO:0000313|EMBL:ACA16626.1};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
2-oxoglutarate dehydrogenase, E1 subunit n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UCF3_METS4
SCNpilot_cont_500_bf_scaffold_862_12
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14514..15320)
DNA (807bp) protein (269aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
sucD; succinyl-CoA synthetase subunit alpha (EC:6.2.1.5); K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RPS9_9BRAD
SCNpilot_cont_500_bf_scaffold_862_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15330..16526)
DNA (1197bp) protein (399aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
succinyl-CoA synthetase subunit beta (EC:6.2.1.5); K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
Succinyl-CoA ligase [ADP-forming] subunit beta n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P288_9BRAD
SCNpilot_cont_500_bf_scaffold_862_14
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16648..17613)
DNA (966bp) protein (322aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904};; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
malate dehydrogenase; K00024 malate dehydrogenase [EC:1.1.1.37] rbh
malate dehydrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031105B5
SCNpilot_cont_500_bf_scaffold_862_15
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17878..18501)
DNA (624bp) protein (208aa)
Regulatory protein TetR n=5 Tax=Methylobacterium extorquens RepID=A9W385_METEP
TetR family transcriptional regulator
Putative transcriptional regulator (Helix-turn-helix structure) {ECO:0000313|EMBL:ACS39398.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
SCNpilot_cont_500_bf_scaffold_862_16
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18739..19911)
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EE4063
ATPase {ECO:0000313|EMBL:KFG66678.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
AFG1 family ATPase; K06916
SCNpilot_cont_500_bf_scaffold_862_17
unknown

Not on your lists

20321..20584
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_862_18
unknown

Not on your lists

20695..20961
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_862_19
unknown

Not on your lists

21386..21598
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_862_20
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21946..22569
DNA (624bp) protein (208aa)
GCN5-related N-acetyltransferase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I3U6_RHOVT
N-acetyltransferase GCN5
GCN5 family acetyltransferase {ECO:0000313|EMBL:KAI93597.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
SCNpilot_cont_500_bf_scaffold_862_21
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22596..23276)
DNA (681bp) protein (227aa)
Outer membrane lipoprotein omp19 n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UKI7_METS4
outer membrane lipoprotein omp19
Outer membrane lipoprotein omp19 {ECO:0000313|EMBL:ACA20320.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_500_bf_scaffold_862_22
bacterium YEK0313, Bacteria

Not on your lists

comp(23374..25419)
DNA (2046bp) protein (682aa)
peptidyl-dipeptidase a protein; K01284 peptidyl-dipeptidase Dcp [EC:3.4.15.5]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037BD3CC
Peptidyl-dipeptidase dcp {ECO:0000313|EMBL:CEJ15628.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_500_bf_scaffold_862_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25560..26345)
DNA (786bp) protein (262aa)
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
succinate dehydrogenase/fumarate reductase iron-sulfur protein; K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1] rbh
succinate dehydrogenase iron-sulfur subunit n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031F2311 rbh
SCNpilot_cont_500_bf_scaffold_862_24
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26523..28010
DNA (1488bp) protein (496aa)
Signal transduction histidine kinase n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VDY0_CAUST rbh
signal transduction histidine kinase rbh
Signal transduction histidine kinase {ECO:0000313|EMBL:ADG08680.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_500_bf_scaffold_862_25

Not on your lists

28007..28381
DNA (375bp) protein (125aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMS3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKN62804.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
response regulator receiver protein
SCNpilot_cont_500_bf_scaffold_862_26
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28394..29236)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TU32_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE09970.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
methyltransferase
SCNpilot_cont_500_bf_scaffold_862_27
unknown

Not on your lists

comp(29248..29538)
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_862_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29549..31396)
DNA (1848bp) protein (616aa)
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.5.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1]
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Succinate dehydrogenase, flavoprotein subunit n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IJU6_BEII9
SCNpilot_cont_500_bf_scaffold_862_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31400..31792)
DNA (393bp) protein (131aa)
sdhD; succinate dehydrogenase hydrophobic membrane anchor (EC:1.3.99.1); K00242 succinate dehydrogenase membrane anchor subunit
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031D7638
Succinate dehydrogenase, hydrophobic membrane anchor protein {ECO:0000313|EMBL:KFC63410.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_cont_500_bf_scaffold_862_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31803..32129)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002ECD559
Succinate dehydrogenase, cytochrome b556 subunit {ECO:0000313|EMBL:KFC63411.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
succinate dehydrogenase, cytochrome b556 subunit; K00241 succinate dehydrogenase cytochrome b556 subunit
Displaying items 1-30 of 95 in total

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