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SCNpilot_cont_500_bf_scaffold_3845

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3845_1
Pseudomonas sp. Chol1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..807
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D29B70 rbh
CoA-transferase subunit beta {ECO:0000313|EMBL:EKM95687.1}; TaxID=440512 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Chol1.;"
putative CoA-transferase beta subunit
SCNpilot_cont_500_bf_scaffold_3845_2
Mycobacterium aromaticivorans, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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813..1586
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00038149E2 rbh
Dehydrogenase {ECO:0000313|EMBL:KDE99508.1}; TaxID=1440774 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium aromaticivorans JS19b1 = JCM 16368.;"
dehydrogenase
SCNpilot_cont_500_bf_scaffold_3845_3
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1686..2891
DNA (1206bp) protein (402aa)
acetyl-CoA acetyltransferase (EC:2.3.1.16); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] rbh
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ABQ69982.1}; EC=2.3.1.16 {ECO:0000313|EMBL:ABQ69982.1};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000370EC5D rbh
SCNpilot_cont_500_bf_scaffold_3845_4
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2894..3478
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003775319
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS61838.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_500_bf_scaffold_3845_5
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(3523..4323)
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030638F8 rbh
TetR family transcriptional regulator
Regulatory protein TetR {ECO:0000313|EMBL:AEA26374.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_3845_6
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(4347..5261)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036AA7D8 rbh
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACU34772.1}; TaxID=446462 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
SCNpilot_cont_500_bf_scaffold_3845_7
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5399..6145)
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00038104FD
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AGH48654.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_500_bf_scaffold_3845_8
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6299..7423
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035D32A5 rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KJK19755.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
acyl-CoA dehydrogenase
SCNpilot_cont_500_bf_scaffold_3845_9
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7420..8604
DNA (1185bp) protein (395aa)
Acyl-CoA dehydrogenase (EC:1.3.99.3); K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000362FB49 rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EPX94660.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
SCNpilot_cont_500_bf_scaffold_3845_10
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8604..9164
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036DB72B
Uncharacterized protein {ECO:0000313|EMBL:KJS05066.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3845_11
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9161..9472
DNA (312bp) protein (104aa)
Short-chain dehydrogenase/reductase SDR (EC:1.1.1.36); K00023 acetoacetyl-CoA reductase [EC:1.1.1.36]
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037F2C1B
Uncharacterized protein {ECO:0000313|EMBL:AKH98837.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
Displaying 11 items

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