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SCNpilot_cont_500_bf_scaffold_653

Search features with annotation key words

Displaying items 1-30 of 95 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_653_1
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(73..1779)
DNA (1707bp) protein (569aa)
Uncharacterized protein n=1 Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8AY06_FRADG rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEH08505.1}; TaxID=656024 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
SCNpilot_cont_500_bf_scaffold_653_2
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1776..3155)
DNA (1380bp) protein (460aa)
Putative integral membrane protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXT9_PSEUX rbh
integral membrane protein rbh
Putative integral membrane protein {ECO:0000313|EMBL:AEA28745.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_653_3
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3157..4149)
DNA (993bp) protein (331aa)
Deoxyribonuclease IV; K01151 deoxyribonuclease IV [EC:3.1.21.2] rbh
Deoxyribonuclease IV (Phage-T(4)-induced) {ECO:0000313|EMBL:AEA28744.1}; EC=3.1.21.2 {ECO:0000313|EMBL:AEA28744.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Deoxyribonuclease IV (Phage-T(4)-induced) n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXT8_PSEUX rbh
SCNpilot_cont_500_bf_scaffold_653_4
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


4168..4593
DNA (426bp) protein (142aa)
30S ribosomal protein S6 n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXT7_PSEUX
30S ribosomal protein S6; K02990 small subunit ribosomal protein S6
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360, ECO:0000256|SAAS:SAAS00020539}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_653_5
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4603..5124
DNA (522bp) protein (174aa)
Single-stranded DNA-binding protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXT6_PSEUX
single-strand binding protein; K03111 single-strand DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_653_6
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


5161..5397
DNA (237bp) protein (79aa)
30S ribosomal protein S18 n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXT5_PSEUX
30S ribosomal protein S18; K02963 small subunit ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_653_7
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


5412..5861
DNA (450bp) protein (150aa)
50S ribosomal protein L9 n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXT4_PSEUX
50S ribosomal protein L9; K02939 large subunit ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_653_8
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6300..7856
DNA (1557bp) protein (519aa)
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12] rbh
DNA helicase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFECF4 rbh
Replicative DNA helicase {ECO:0000313|EMBL:AEA28739.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_653_9
Streptomyces sp. HGB0020, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7923..8519
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Streptomyces sp. HGB0020 RepID=S2YGI6_9ACTO
AraC family transcription regulator
Uncharacterized protein {ECO:0000313|EMBL:EPD63326.1}; TaxID=1078086 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HGB0020.;"
SCNpilot_cont_500_bf_scaffold_653_10
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8623..9126)
DNA (504bp) protein (168aa)
Acetyltransferase n=2 Tax=Saccharopolyspora erythraea RepID=T2S3Y7_SACER
Acetyltransferase {ECO:0000313|EMBL:EQD87060.1}; TaxID=1382595 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea D.;"
acetyltransferase
SCNpilot_cont_500_bf_scaffold_653_11
Amycolatopsis vancoresmycina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9272..10498
DNA (1227bp) protein (409aa)
Putative MFS transporter n=1 Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1G5J1_9PSEU rbh
Putative MFS transporter {ECO:0000313|EMBL:EOD66732.1}; TaxID=1292037 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM 44592.;"
putative MFS transporter rbh
SCNpilot_cont_500_bf_scaffold_653_12
Streptomyces ipomoeae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10783..11289
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Promicromonospora sukumoe RepID=UPI00037B1CAC
Dioxygenase {ECO:0000313|EMBL:EKX68846.1}; TaxID=698759 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ipomoeae 91-03.;"
intradiol ring-cleavage dioxygenase
SCNpilot_cont_500_bf_scaffold_653_13
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11183..12118)
DNA (936bp) protein (312aa)
Fumarylacetoacetase {ECO:0000313|EMBL:CCG03860.1}; EC=3.7.1.2 {ECO:0000313|EMBL:CCG03860.1};; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
hypothetical protein n=1 Tax=Actinopolyspora halophila RepID=UPI000368C82F rbh
Fumarylacetoacetase rbh
SCNpilot_cont_500_bf_scaffold_653_14
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(12115..12588)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NWE3_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB50517.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_cont_500_bf_scaffold_653_15
unknown

Not on your lists

comp(12607..12822)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_653_16
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12819..13712)
DNA (894bp) protein (298aa)
oxidoreductase n=1 Tax=Actinopolyspora halophila RepID=UPI000369947E rbh
putative oxidoreductase rbh
Putative oxidoreductase {ECO:0000313|EMBL:CCG03859.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
SCNpilot_cont_500_bf_scaffold_653_17
Streptomyces ambofaciens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13742..14818)
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Actinopolyspora halophila RepID=UPI0003727D3C rbh
Putative metal-dependent hydrolase of the TIM-barrel fold {ECO:0000313|EMBL:CAJ89989.1}; TaxID=278992 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ambofaciens ATCC 23877.;"
putative hydrolase rbh
SCNpilot_cont_500_bf_scaffold_653_18
Mumia flava, Mumia, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14815..15939)
DNA (1125bp) protein (375aa)
FAD-dependent oxidoreductase n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002628A38 rbh
2-polyprenyl-6-methoxyphenol hydroxylase {ECO:0000313|EMBL:KHL09981.1}; TaxID=1348852 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia.;" source="Mumia flava.;"
monooxygenase FAD-binding protein rbh
SCNpilot_cont_500_bf_scaffold_653_19
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15936..16961)
DNA (1026bp) protein (342aa)
Cyclase n=1 Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1HT27_9PSEU rbh
Cyclase {ECO:0000313|EMBL:KGH45025.1}; TaxID=1522368 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter sp. KNN45-2b.;"
cyclase rbh
SCNpilot_cont_500_bf_scaffold_653_20
Streptomyces zinciresistens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16958..17866)
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Nocardiopsis synnemataformans RepID=UPI00034A2117 rbh
Hydrolase {ECO:0000313|EMBL:EGX58065.1}; TaxID=700597 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces zinciresistens K42.;"
putative hydrolase rbh
SCNpilot_cont_500_bf_scaffold_653_21
Nocardioidaceae bacterium Broad-1, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17951..18922
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Actinopolyspora halophila RepID=UPI00035FC562 rbh
Nodulation protein d1 {ECO:0000313|EMBL:EGD41630.1}; TaxID=408672 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae.;" source="Nocardioidaceae bacterium Broad-1.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_653_22
Streptomyces scabiei, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18867..19916)
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE323 rbh
hypothetical protein; K07140
Uncharacterized protein {ECO:0000313|EMBL:CBG75257.1}; TaxID=680198 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces scabies (strain 87.22) (Streptomyces scabiei).;"
SCNpilot_cont_500_bf_scaffold_653_23
unknown

Not on your lists

comp(20002..20277)
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_653_24
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20423..21187)
DNA (765bp) protein (255aa)
3-oxoadipate enol-lactonase; K01055 3-oxoadipate enol-lactonase [EC:3.1.1.24] rbh
3-oxoadipate enol-lactonase {ECO:0000313|EMBL:AEA28737.1}; EC=3.1.1.24 {ECO:0000313|EMBL:AEA28737.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
3-oxoadipate enol-lactonase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXT1_PSEUX rbh
SCNpilot_cont_500_bf_scaffold_653_25
Prauserella sp. Am3, Prauserella, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21184..21933)
DNA (750bp) protein (250aa)
Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit {ECO:0000313|EMBL:KID30691.1}; EC=2.8.3.12 {ECO:0000313|EMBL:KID30691.1};; TaxID=1515610 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Prauserella.;" source="Prauserella sp. Am3.;"
coenzyme A transferase; K01040 glutaconate CoA-transferase, subunit B [EC:2.8.3.12] rbh
3-oxoadipate:succinyl-CoA transferase subunit B n=1 Tax=Nocardiopsis salina RepID=UPI00034A56B9 rbh
SCNpilot_cont_500_bf_scaffold_653_26
Nocardiopsis dassonvillei, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21930..22739)
DNA (810bp) protein (270aa)
coenzyme A transferase; K01039 glutaconate CoA-transferase, subunit A [EC:2.8.3.12] rbh
Coenzyme A transferase n=1 Tax=Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 / JCM 7437 / NCTC 10488) RepID=D7AVL8_NOCDD rbh
Coenzyme A transferase {ECO:0000313|EMBL:ADH67707.1}; TaxID=446468 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 /; JCM 7437 / NCTC 10488) (Actinomadura dassonvillei).;"
SCNpilot_cont_500_bf_scaffold_653_27
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22856..23737
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI0003726EF2
Putative aldo/keto reductase, NAD(P)-binding {ECO:0000313|EMBL:CCM62092.1}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
putative oxidoreductase
SCNpilot_cont_500_bf_scaffold_653_28
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23778..24089)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXS8_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA28734.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_653_29
unknown

Not on your lists

24662..24853
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_653_30
unknown

Not on your lists

25499..25666
DNA (168bp) protein (56aa)

This feature has no annotations

Displaying items 1-30 of 95 in total

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