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SCNpilot_cont_500_bf_scaffold_859

Search features with annotation key words

Displaying items 1-30 of 146 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_859_1
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(296..2530)
DNA (2235bp) protein (745aa)
UvrABC system protein B n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN21_PSEUX rbh
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
UvrABC system protein B; K03702 excinuclease ABC subunit B rbh
SCNpilot_cont_500_bf_scaffold_859_2
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2569..3078
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN22_PSEUX
hypothetical protein; K09146 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA26035.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_859_3
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3090..3680)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN23_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA26036.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_859_4
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3677..4324)
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE809
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEA26037.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_859_5
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4442..5641)
DNA (1200bp) protein (400aa)
coaE; dephospho-CoA kinase/protein folding accessory domain-containing protein (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24] rbh
dephospho-CoA kinase n=1 Tax=Saccharopolyspora erythraea RepID=UPI0001D315B4 rbh
Dephospho-CoA kinase {ECO:0000313|EMBL:EWM12472.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
SCNpilot_cont_500_bf_scaffold_859_6
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5731..6414)
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE807
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA26039.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_859_7
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(6548..8035)
DNA (1488bp) protein (496aa)
30S ribosomal protein S1 n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN27_PSEUX rbh
RNA binding S1 domain-containing protein; K02945 small subunit ribosomal protein S1 rbh
RNA binding S1 domain protein {ECO:0000313|EMBL:AEA26040.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_859_8
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8302..9069
DNA (768bp) protein (256aa)
Methyltransferase type 11 n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN28_PSEUX rbh
type 11 methyltransferase rbh
Methyltransferase type 11 {ECO:0000313|EMBL:AEA26041.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_859_9
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9449..9880
DNA (432bp) protein (144aa)
aromatic compound degradation protein PaaI n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE802
phenylacetic acid degradation-like protein
Phenylacetic acid degradation-related protein {ECO:0000313|EMBL:AEA26042.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_859_10
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10221..10943)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI0003666370 rbh
Branched-chain amino acid transporter ATP-binding protein {ECO:0000313|EMBL:EWM12483.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
Branched-chain amino acid transport ATP-binding protein LivF rbh
SCNpilot_cont_500_bf_scaffold_859_11
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10940..11746)
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI0003700C2E rbh
High-affinity branched-chain amino acid transport ATP-binding protein LivG {ECO:0000313|EMBL:AHH95976.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
branched-chain amino acid transport system ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_cont_500_bf_scaffold_859_12
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11743..13488)
DNA (1746bp) protein (582aa)
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI0003810FAC rbh
Putative membrane protein {ECO:0000313|EMBL:AHH95975.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_859_13
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13485..14414)
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI000360A87A rbh
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) {ECO:0000313|EMBL:CEL17670.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
amino acid ABC transporter; K01997 branched-chain amino acid transport system permease protein
SCNpilot_cont_500_bf_scaffold_859_14
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14513..15745)
DNA (1233bp) protein (411aa)
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI00036D5DB3 rbh
Branched-chain amino acid ABC transporter periplasmic amino acid-binding protein {ECO:0000313|EMBL:EWM12487.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_859_15
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15929..16564)
DNA (636bp) protein (212aa)
Response regulator receiver and ANTAR domain protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN35_PSEUX rbh
response regulator receiver and ANTAR domain-containing protein; K07183 response regulator NasT rbh
Response regulator receiver and ANTAR domain protein {ECO:0000313|EMBL:AEA26048.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_859_trna_1
unknown

Not on your lists

16679..16761
DNA (83bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_859_16
Maribacter sp. HTCC2170, Maribacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16711..17037)
DNA (327bp) protein (109aa)
Putative uncharacterized protein n=1 Tax=Maribacter sp. (strain HTCC2170 / KCCM 42371) RepID=A4AWH2_MARSH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAQ99690.1}; TaxID=313603 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Maribacter.;" source="Maribacter sp. (strain HTCC2170 / KCCM 42371).;"
SCNpilot_cont_500_bf_scaffold_859_17
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17034..18167)
DNA (1134bp) protein (378aa)
membrane dipeptidase (EC:3.4.13.19); K01273 membrane dipeptidase [EC:3.4.13.19] rbh
membrane dipeptidase n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI0003634BEA rbh
Putative dipeptidase {ECO:0000313|EMBL:CEL14664.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
SCNpilot_cont_500_bf_scaffold_859_18
Mycobacterium mageritense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18271..19374
DNA (1104bp) protein (368aa)
High-affinity nickel-transport protein n=4 Tax=Amycolatopsis mediterranei RepID=I7ECZ9_AMYMS
High-affinity nickel-transporter, HoxN/HupN/NixA family {ECO:0000313|EMBL:CDO24425.1}; TaxID=53462 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium mageritense.;"
nixA; high-affinity nickel-transport protein
SCNpilot_cont_500_bf_scaffold_859_19
Streptomyces pristinaespiralis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19392..19865
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEE7A
Putative uncharacterized protein {ECO:0000313|EMBL:EDY61686.2}; TaxID=457429 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces pristinaespiralis ATCC 25486.;"
hypothetical protein; K09763 hypothetical protein
SCNpilot_cont_500_bf_scaffold_859_20
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19919..20521
DNA (603bp) protein (201aa)
type 11 methyltransferase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B55F1D
Methyltransferase type 11 {ECO:0000313|EMBL:KGH47748.1}; TaxID=1522368 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter sp. KNN45-2b.;"
type 11 methyltransferase
SCNpilot_cont_500_bf_scaffold_859_21
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20559..21425
DNA (867bp) protein (289aa)
Putative uncharacterized protein n=1 Tax=Gordonia amarae NBRC 15530 RepID=G7GJF2_9ACTO
GCN5 family acetyltransferase {ECO:0000313|EMBL:EWT03320.1}; TaxID=1386089 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
SCNpilot_cont_500_bf_scaffold_859_22
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21485..22606)
DNA (1122bp) protein (374aa)
Putative ABC transporter substrate binding protein n=1 Tax=Frankia sp. CN3 RepID=G6HBK4_9ACTO
ABC transporter substrate binding protein; K02051 NitT/TauT family transport system substrate-binding protein
Putative ABC transporter substrate binding protein {ECO:0000313|EMBL:ADP83908.1}; Flags: Precursor;; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
SCNpilot_cont_500_bf_scaffold_859_23
Rhodococcus sp. B7740, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22617..23429)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Nocardia sp. BMG111209 RepID=UPI000367545F
Hydroxymethylpyrimidine ABC transporter, transmembrane component {ECO:0000313|EMBL:AJW38232.1}; TaxID=1564114 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. B7740.;"
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein
SCNpilot_cont_500_bf_scaffold_859_24
Nocardia seriolae, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23426..24193)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Nocardia sp. BMG111209 RepID=UPI000368344F rbh
Nitrate ABC transporter ATPase {ECO:0000313|EMBL:GAM44626.1}; TaxID=37332 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia seriolae.;"
nitrate/sulfonate/bicarbonate ABC transporter ATPase
SCNpilot_cont_500_bf_scaffold_859_25
Rhodococcus sp. B7740, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24190..24591)
DNA (402bp) protein (134aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Rhodococcus sp. AW25M09 RepID=L8DGC8_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:AJW38230.1}; TaxID=1564114 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. B7740.;"
ABC transporter permease
SCNpilot_cont_500_bf_scaffold_859_26
Saccharomonospora azurea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25085..25831)
DNA (747bp) protein (249aa)
Uncharacterized protein n=2 Tax=Saccharomonospora azurea RepID=H8GEB4_9PSEU rbh
Short-chain dehydrogenase {ECO:0000313|EMBL:EHK80239.1}; TaxID=1114959 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora azurea SZMC 14600.;"
short chain dehydrogenase/reductase family oxidoreductase rbh
SCNpilot_cont_500_bf_scaffold_859_27
Streptomyces pluripotens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25870..26265)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Streptomyces vitaminophilus RepID=UPI0003660B8C
Methyltransferase {ECO:0000313|EMBL:KIE39424.1}; TaxID=1355015 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces pluripotens.;"
putative methyltransferase, YaeB/AF_0241 family
SCNpilot_cont_500_bf_scaffold_859_28
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26302..27105
DNA (804bp) protein (268aa)
shikimate dehydrogenase substrate binding domain-containing protein; K00014 shikimate dehydrogenase [EC:1.1.1.25] rbh
Shikimate dehydrogenase substrate binding domain protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D0W0_PSEUX rbh
Shikimate dehydrogenase substrate binding domain protein {ECO:0000313|EMBL:AEA25812.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_859_29
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27175..27537
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFDE90
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAQ02258.1}; TaxID=31964 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM; 20744 / JCM 9667 / LMG 2889 / C-1) (Corynebacterium sepedonicum).;"
Displaying items 1-30 of 146 in total

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