ggKbase home page

SCNpilot_cont_500_bf_scaffold_986

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_986_1
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..328)
DNA (327bp) protein (109aa)
Major facilitator superfamily MFS_1 n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CNK0_PSEUX
Major facilitator superfamily protein {ECO:0000313|EMBL:AHH94452.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
major facilitator superfamily protein; K08178 MFS transporter, SHS family, lactate transporter
SCNpilot_cont_500_bf_scaffold_986_2
Streptomyces albus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

432..2177
DNA (1746bp) protein (582aa)
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI000372BF24 rbh
Mannossyltransferase {ECO:0000313|EMBL:AJE86736.1}; TaxID=1888 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces albus.;"
glycosyl transferase rbh
SCNpilot_cont_500_bf_scaffold_986_3
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2349..2552
DNA (204bp) protein (68aa)
Cold-shock DNA-binding domain protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CTL3_PSEUX
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:AEA28516.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_986_4
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2605..3141)
DNA (537bp) protein (179aa)
Regulatory protein TetR n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CQW3_PSEUX
TetR family transcriptional regulator
Regulatory protein TetR {ECO:0000313|EMBL:AEA23662.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_986_5
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3192..4412
DNA (1221bp) protein (407aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI000380D4DF rbh
Putative MFS transporter {ECO:0000313|EMBL:AIJ24477.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
Multidrug resistance protein mdtL rbh
SCNpilot_cont_500_bf_scaffold_986_6
Streptomyces sp. AA4, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4381..6792)
DNA (2412bp) protein (804aa)
penicillin-binding protein n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI00035D60D2 rbh
Predicted protein {ECO:0000313|EMBL:EFL06946.1}; TaxID=591158 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AA4.;"
peptidoglycan glycosyltransferase rbh
SCNpilot_cont_500_bf_scaffold_986_7
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6996..8261
DNA (1266bp) protein (422aa)
Geranylgeranyl reductase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CYI5_PSEUX rbh
geranylgeranyl reductase rbh
Geranylgeranyl reductase {ECO:0000313|EMBL:AEA25625.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_986_8
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8359..9183)
DNA (825bp) protein (275aa)
short-chain dehydrogenase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEE69 rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AIY17410.1}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
short chain dehydrogenase rbh
SCNpilot_cont_500_bf_scaffold_986_9
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9183..10316)
DNA (1134bp) protein (378aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:EFC79064.1}; EC=2.3.1.16 {ECO:0000313|EMBL:EFC79064.1};; TaxID=102897 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
acetyl-CoA acetyltransferase; K00632 acetyl-CoA acyltransferase [EC:2.3.1.16] rbh
Acetyl-CoA acetyltransferase n=1 Tax=Frankia sp. EUN1f RepID=D3DDE4_9ACTO rbh
SCNpilot_cont_500_bf_scaffold_986_10
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10397..10879)
DNA (483bp) protein (161aa)
cyclase/dehydrase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEDBE
Cyclase/dehydrase {ECO:0000313|EMBL:EON23867.1}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
cyclase/dehydrase
SCNpilot_cont_500_bf_scaffold_986_11
unknown

Not on your lists

10897..11151
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_986_12
Ignavibacterium album, Ignavibacterium, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(11163..12740)
DNA (1578bp) protein (526aa)
Dolichyl-phosphate-mannose-protein mannosyltransferase n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AMH8_IGNAJ
Dolichyl-phosphate-mannose-protein mannosyltransferase
Dolichyl-phosphate-mannose-protein mannosyltransferase {ECO:0000313|EMBL:AFH50185.1}; TaxID=945713 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Ignavibacteriaceae; Ignavibacterium.;" source="Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 /; Mat9-16).;"
SCNpilot_cont_500_bf_scaffold_986_13
unknown

Not on your lists

comp(12797..13222)
DNA (426bp) protein (142aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_986_14
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13769..16450
DNA (2682bp) protein (894aa)
Mixed type I polyketide synthase-non ribosomal peptide synthetase n=1 Tax=Frankia alni (strain ACN14a) RepID=Q0RPK1_FRAAA
mixed type I polyketide synthase-non ribosomal peptide synthetase
Mixed type I polyketide synthase-non ribosomal peptide synthetase {ECO:0000313|EMBL:CAJ60530.1}; TaxID=326424 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
SCNpilot_cont_500_bf_scaffold_986_15
Curtobacterium flaccumfaciens, Curtobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16500..18041
DNA (1542bp) protein (514aa)
polysaccharide biosynthesis protein n=1 Tax=Curtobacterium sp. B8 RepID=UPI0003B65A40 rbh
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:EYT57155.1}; TaxID=1292022 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Curtobacterium.;" source="Curtobacterium flaccumfaciens UCD-AKU.;"
lipopolysaccharide biosynthesis translocase rbh
SCNpilot_cont_500_bf_scaffold_986_16
Pedobacter sp. 4236, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18055..18855
DNA (801bp) protein (267aa)
Glycoside hydrolase family 16 n=1 Tax=Pedobacter sp. 4236 RepID=B4XEK7_9SPHI
Glycoside hydrolase family 16 {ECO:0000313|EMBL:ABW02992.1}; TaxID=474404 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. 4236.;"
glycoside hydrolase family protein
SCNpilot_cont_500_bf_scaffold_986_17
RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18985..19812
DNA (828bp) protein (276aa)
Glucan endo-1,3-beta-D-glucosidase n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L2N4_HALH1
glucan endo-1,3-beta-D-glucosidase
Tax=RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated
SCNpilot_cont_500_bf_scaffold_986_18

Not on your lists

19812..20525
DNA (714bp) protein (238aa)
Peptidase S51 dipeptidase E n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M0P7_ACIFD
Uncharacterized protein {ECO:0000313|EMBL:KGA21015.1}; TaxID=449393 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
peptidase S51 dipeptidase E
SCNpilot_cont_500_bf_scaffold_986_19
Rhodococcus sp. AW25M09, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20551..21585
DNA (1035bp) protein (345aa)
Luciferase-like, subgroup n=1 Tax=Rhodococcus sp. AW25M09 RepID=L8DH08_9NOCA rbh
Luciferase-like, subgroup {ECO:0000313|EMBL:CCQ15896.1}; TaxID=1268303 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. AW25M09.;"
flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase rbh
SCNpilot_cont_500_bf_scaffold_986_20
Rhodococcus sp. PML026, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21572..22771)
DNA (1200bp) protein (400aa)
fmn-dependent alpha-hydroxyacid dehydrogenase; K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] rbh
mycofactocin system heme/flavin oxidoreductase MftD n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B755B9 rbh
Fmn-dependent alpha-hydroxyacid dehydrogenase {ECO:0000313|EMBL:KJV00166.1}; TaxID=1356405 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. PML026.;"
SCNpilot_cont_500_bf_scaffold_986_21
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23012..23248
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Nocardioides sp. Iso805N RepID=UPI0003822C47
Uncharacterized protein {ECO:0000313|EMBL:EON22986.1}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_986_22
Streptomyces lydicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23254..23985)
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Actinomadura flavalba RepID=UPI00037E443C rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:AJT63546.1}; TaxID=1403539 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces lydicus A02.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_986_23
Amycolatopsis sp. MJM2582, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24075..25232
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Actinomadura flavalba RepID=UPI00036CE565 rbh
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KFZ81457.1}; TaxID=1427749 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis sp. MJM2582.;"
kynurenine 3-monooxygenase
SCNpilot_cont_500_bf_scaffold_986_24
Thalassobium sp. R2A62, Thalassobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25633..26157
DNA (525bp) protein (175aa)
Putative orphan protein n=1 Tax=Thalassiobium sp. R2A62 RepID=C7D6G0_9RHOB
Putative orphan protein {ECO:0000313|EMBL:EET46489.1}; TaxID=633131 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thalassobium.;" source="Thalassobium sp. R2A62.;"
SCNpilot_cont_500_bf_scaffold_986_25
unknown

Not on your lists

comp(26371..26625)
DNA (255bp) protein (85aa)
Putative uncharacterized protein n=1 Tax=Saccharomonospora paurometabolica YIM 90007 RepID=G4IVS1_9PSEU
SCNpilot_cont_500_bf_scaffold_986_26
unknown

Not on your lists

comp(27216..27377)
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_986_27
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27374..27862)
DNA (489bp) protein (163aa)
Uncharacterized protein n=3 Tax=Amycolatopsis mediterranei RepID=G0G219_AMYMS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEK44175.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
SCNpilot_cont_500_bf_scaffold_986_28
unknown

Not on your lists

27984..28229
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_986_29
unknown

Not on your lists

28966..29130
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_986_30
Cellulomonas carbonis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29355..29801
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036BDB72
Uncharacterized protein {ECO:0000313|EMBL:KGM11681.1}; TaxID=947969 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas carbonis T26.;"
hypothetical protein
Displaying items 1-30 of 40 in total

View Taxonomy