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SCNpilot_cont_500_bf_scaffold_1201

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1201_1
Nocardia nova, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

240..770
DNA (531bp) protein (177aa)
single-stranded DNA-binding protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI00037EA17B
Single-stranded DNA-binding protein {ECO:0000313|EMBL:AHH20906.1}; TaxID=1415166 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia nova SH22a.;"
single-strand binding protein; K03111 single-strand DNA-binding protein
SCNpilot_cont_500_bf_scaffold_1201_2
Mycobacterium yongonense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

816..2471
DNA (1656bp) protein (552aa)
Putative ABC transporter ATP-binding protein n=3 Tax=Mycobacterium RepID=I2AAZ5_9MYCO rbh
ABC transporter ATP-binding protein rbh
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:AGP63094.1}; TaxID=1138871 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium yongonense 05-1390.;"
SCNpilot_cont_500_bf_scaffold_1201_3
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2541..5249
DNA (2709bp) protein (903aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJS7_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA26952.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_1201_4
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5373..10109
DNA (4737bp) protein (1579aa)
NAD-glutamate dehydrogenase; K15371 glutamate dehydrogenase [EC:1.4.1.2] rbh
NAD-glutamate dehydrogenase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D1N9_PSEUX rbh
NAD-glutamate dehydrogenase {ECO:0000313|EMBL:AEA26951.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_1201_5
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10113..10532
DNA (420bp) protein (140aa)
thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Thioesterase superfamily protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D1N8_PSEUX
Thioesterase superfamily protein {ECO:0000313|EMBL:AEA26950.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_1201_6
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10529..11164
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D1N7_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA26949.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_1201_7
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11189..12736)
DNA (1548bp) protein (516aa)
alpha amylase; K01187 alpha-glucosidase [EC:3.2.1.20] rbh
Alpha amylase catalytic region n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D1N6_PSEUX rbh
Alpha amylase catalytic region {ECO:0000313|EMBL:AEA26948.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_1201_8
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12766..13149)
DNA (384bp) protein (128aa)
oxygen-binding heme protein n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFF252
globin; K06886 hemoglobin
Hemoglobin {ECO:0000313|EMBL:AIJ21781.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
SCNpilot_cont_500_bf_scaffold_1201_9
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13432..14415)
DNA (984bp) protein (328aa)
small mechanosensitive ion channel protein MscS n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFF253 rbh
mechanosensitive ion channel MscS; K03442 small conductance mechanosensitive channel rbh
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:AEA26946.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_1201_10
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14417..16519)
DNA (2103bp) protein (701aa)
Prolyl oligopeptidase {ECO:0000313|EMBL:AEA26945.1}; EC=3.4.21.26 {ECO:0000313|EMBL:AEA26945.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
prolyl oligopeptidase; K01322 prolyl oligopeptidase [EC:3.4.21.26] rbh
Prolyl oligopeptidase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D1N3_PSEUX rbh
SCNpilot_cont_500_bf_scaffold_1201_11
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16632..17318)
DNA (687bp) protein (229aa)
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D1N2_PSEUX
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; K07005
Flavin-nucleotide-binding protein {ECO:0000313|EMBL:KGH48402.1}; TaxID=1522368 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter sp. KNN45-2b.;"
SCNpilot_cont_500_bf_scaffold_1201_12
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17345..18724
DNA (1380bp) protein (460aa)
Transcriptional regulator, GntR family with aminotransferase domain n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SHD7_GEOOG rbh
GntR family transcriptional regulator; K00375 GntR family transcriptional regulator / MocR family aminotransferase rbh
Transcriptional regulator, GntR family with aminotransferase domain {ECO:0000313|EMBL:ADB77091.1}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
SCNpilot_cont_500_bf_scaffold_1201_13
Rhodococcus sp. PML026, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18779..19660)
DNA (882bp) protein (294aa)
transketolase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFECD0 rbh
Uncharacterized protein {ECO:0000313|EMBL:KJV01633.1}; TaxID=1356405 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. PML026.;"
transketolase B subunit rbh
SCNpilot_cont_500_bf_scaffold_1201_14
Rhodococcus sp. PML026, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19660..20310)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Rhodococcus RepID=UPI0003829081 rbh
Uncharacterized protein {ECO:0000313|EMBL:KJV01632.1}; TaxID=1356405 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. PML026.;"
transketolase
SCNpilot_cont_500_bf_scaffold_1201_15
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20345..20785)
DNA (441bp) protein (147aa)
Transcriptional regulator, MarR family n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CPY4_PSEUX
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:AEA26167.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_1201_16
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20791..23412)
DNA (2622bp) protein (874aa)
Major facilitator superfamily MFS_1 n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CRG0_PSEUX rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEA26168.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
major facilitator superfamily protein rbh
SCNpilot_cont_500_bf_scaffold_1201_17
unknown

Not on your lists

23754..24005
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1201_18
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24353..25972)
DNA (1620bp) protein (540aa)
Putative delta-1-pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:AHH96582.1}; EC=1.2.1.88 {ECO:0000313|EMBL:AHH96582.1};; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
delta-1-pyrroline-5-carboxylate dehydrogenase; K00294 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.1.12] rbh
hypothetical protein n=1 Tax=Saccharomonospora halophila RepID=UPI000375D211 rbh
SCNpilot_cont_500_bf_scaffold_1201_19
Saccharothrix sp. ST-888, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26167..27726)
DNA (1560bp) protein (520aa)
transcriptional regulator n=1 Tax=Actinopolyspora mortivallis RepID=UPI00036AEA2A rbh
Transcriptional regulator {ECO:0000313|EMBL:KJK59083.1}; TaxID=1427391 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix sp. ST-888.;"
transcriptional regulator CdaR rbh
SCNpilot_cont_500_bf_scaffold_1201_20
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27819..28721
DNA (903bp) protein (301aa)
proline dehydrogenase; K00318 proline dehydrogenase [EC:1.5.99.8] rbh
Proline dehydrogenase n=1 Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6WPY1_ACTMD rbh
Proline dehydrogenase {ECO:0000313|EMBL:ACU35037.1}; Flags: Precursor;; TaxID=446462 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
Displaying 20 items

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