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SCNpilot_cont_500_bf_scaffold_1310

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1310_trna_1
unknown

Not on your lists

4..76
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1310_1
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

240..1946
DNA (1707bp) protein (569aa)
Integrase family protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXH6_PSEUX rbh
integrase protein rbh
Integrase family protein {ECO:0000313|EMBL:AEA26550.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_1310_2
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2415..2900
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI00026271D1
Phosphotransferase family protein {ECO:0000313|EMBL:KJE25538.1}; TaxID=1502723 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
aminoglycoside phosphotransferase
SCNpilot_cont_500_bf_scaffold_1310_3
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2897..4294)
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Frankia sp. EUN1f RepID=D3CUJ2_9ACTO rbh
Uncharacterized protein {ECO:0000313|EMBL:EFC85722.1}; Flags: Precursor;; TaxID=102897 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1310_4
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4463..4825)
DNA (363bp) protein (121aa)
GntR family transcriptional regulator n=1 Tax=Salinispora arenicola RepID=UPI000374197A
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ADG86822.1}; TaxID=469371 species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
SCNpilot_cont_500_bf_scaffold_1310_5
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4966..5205
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Actinopolyspora halophila RepID=UPI0003728CC7
excisionase
DNA binding domain protein, excisionase family {ECO:0000313|EMBL:AEA26546.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_1310_6
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5208..5429
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXH1_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA26545.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_1310_7
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5426..5998
DNA (573bp) protein (191aa)
Transcriptional regulator WhiB n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CZE1_PSEUX
transcription factor WhiB
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_1310_8
unknown

Not on your lists

5999..6532
DNA (534bp) protein (178aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1310_9
Gordonia amarae, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6529..7377
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI000381EBB8
Putative uncharacterized protein {ECO:0000313|EMBL:GAB05024.1}; TaxID=1075090 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia amarae NBRC 15530.;"
phage recombinase
SCNpilot_cont_500_bf_scaffold_1310_10
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7377..9446
DNA (2070bp) protein (690aa)
Type IV secretory pathway VirD4 protein-like protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CK90_PSEUX
type IV secretory pathway VirD4 protein-like protein
Type IV secretory pathway VirD4 protein-like protein {ECO:0000313|EMBL:AEA22313.1}; Flags: Precursor;; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_1310_11
Mycobacterium phage Che9c, Che9clikevirus, Caudovirales, Viruses

Not on your lists

9443..10915
DNA (1473bp) protein (491aa)
C-5 cytosine-specific DNA methylase; K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37] rbh
DNA methyltransferase n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI000262656A rbh
Gp65 {ECO:0000313|EMBL:AAN12623.1}; TaxID=205872 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae; Che9clikevirus.;" source="Mycobacterium phage Che9c.;"
SCNpilot_cont_500_bf_scaffold_1310_12
unknown

Not on your lists

10912..11307
DNA (396bp) protein (132aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1310_13
unknown

Not on your lists

11304..12395
DNA (1092bp) protein (364aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1310_14
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12395..13234
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXG7_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA26541.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_cont_500_bf_scaffold_1310_15
unknown

Not on your lists

13231..13950
DNA (720bp) protein (240aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1310_16
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14254..19113
DNA (4860bp) protein (1620aa)
TrwC relaxase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CK94_PSEUX
TrwC relaxase {ECO:0000313|EMBL:AEA22317.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
TrwC relaxase
SCNpilot_cont_500_bf_scaffold_1310_17
unknown

Not on your lists

comp(19148..19459)
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1310_18
unknown

Not on your lists

19678..20376
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Nocardiopsis potens RepID=UPI00034B6F64
SCNpilot_cont_500_bf_scaffold_1310_19
unknown

Not on your lists

comp(20366..21496)
DNA (1131bp) protein (377aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1310_20
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21584..22243)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Frankia sp. EUN1f RepID=D3CRV1_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EFC86583.1}; TaxID=102897 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
SCNpilot_cont_500_bf_scaffold_1310_21
unknown

Not on your lists

comp(22313..22597)
DNA (285bp) protein (95aa)

This feature has no annotations

Displaying 22 items

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