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SCNpilot_cont_500_bf_scaffold_2012

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2012_1
unknown

Not on your lists

2..160
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2012_2
Mesorhizobium sp. L103C119B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(219..1334)
DNA (1116bp) protein (372aa)
UPI0003CFFAD6 related cluster n=3 Tax=unknown RepID=UPI0003CFFAD6 rbh
Transposase IS110 {ECO:0000313|EMBL:ESZ65327.1}; TaxID=1287085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C119B0.;"
transposase of ISMex29, IS110 family rbh
SCNpilot_cont_500_bf_scaffold_2012_3
unknown

Not on your lists

1434..1757
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2012_4
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1767..2126)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D3T4_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL09566.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_500_bf_scaffold_2012_5
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2713..3624)
DNA (912bp) protein (304aa)
UPF0753 protein Nham_4329 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Y4329_NITHX
hypothetical protein; K09822 hypothetical protein
UPF0753 protein Nham_4329 {ECO:0000255|HAMAP-Rule:MF_01871}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_2012_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3602..4948)
DNA (1347bp) protein (449aa)
UPF0753 protein Nham_4329 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Y4329_NITHX
hypothetical protein; K09822 hypothetical protein
UPF0753 protein Nham_4329 {ECO:0000255|HAMAP-Rule:MF_01871}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_2012_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6167..7255)
DNA (1089bp) protein (363aa)
ErfK/YbiS/YcfS/YnhG n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q219W9_RHOPB rbh
hypothetical protein rbh
ErfK/YbiS/YcfS/YnhG {ECO:0000313|EMBL:ABD86817.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_500_bf_scaffold_2012_8
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7373..8116
DNA (744bp) protein (248aa)
Transposase IS4 family protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I421_9RHIZ
Transposase IS4 family protein {ECO:0000313|EMBL:EHK52283.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
transposase IS4 family protein
SCNpilot_cont_500_bf_scaffold_2012_9
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8385..8684
DNA (300bp) protein (100aa)
Transcriptional regulator, Fis family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8Y7_9BRAD
Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:CEG08978.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
transcriptional regulator
SCNpilot_cont_500_bf_scaffold_2012_10
unknown

Not on your lists

8752..8898
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2012_11
unknown

Not on your lists

8954..9250
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2012_12
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9231..9536)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WU60_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ36481.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2012_13
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9670..9915)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WW99_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ35741.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2012_14
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10288..11913
DNA (1626bp) protein (542aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WU54_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EAQ36485.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
peptidoglycan binding domain-containing protein rbh
SCNpilot_cont_500_bf_scaffold_2012_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12187..12435
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QGW9_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64528.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_2012_16
unknown

Not on your lists

13064..13624
DNA (561bp) protein (187aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2012_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13740..15200
DNA (1461bp) protein (487aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QG08_NITHX rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE64839.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_2012_18
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15155..16423
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QG09_NITHX rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE64838.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_2012_19
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16423..18402
DNA (1980bp) protein (660aa)
glycosyl transferase family protein; K00694 cellulose synthase (UDP-forming) [EC:2.4.1.12] rbh
Glycosyl transferase, family 2 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QG10_NITHX rbh
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABE64837.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_2012_20
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18501..18686)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G8B3_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL77000.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_500_bf_scaffold_2012_21
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19343..19837
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X2S0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ33471.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_500_bf_scaffold_2012_22
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20602..20901
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QGU0_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64557.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_2012_23
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21108..21464
DNA (357bp) protein (119aa)
PRC-barrel protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X2S2_9BRAD
PRC-barrel protein {ECO:0000313|EMBL:EAQ33467.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
PRC-barrel protein
SCNpilot_cont_500_bf_scaffold_2012_24
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21861..22685)
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RWD9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD86266.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2012_25
unknown

Not on your lists

23169..23372
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2012_26
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23453..23635)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WZY3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ34454.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_500_bf_scaffold_2012_27
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23797..23973
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXR2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ35229.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_500_bf_scaffold_2012_28
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24518..25951)
DNA (1434bp) protein (478aa)
Phage uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXR6_9BRAD rbh
Phage uncharacterized protein {ECO:0000313|EMBL:EAQ35225.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
phage protein rbh
SCNpilot_cont_500_bf_scaffold_2012_29
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25953..26453)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXR5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ35224.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_500_bf_scaffold_2012_30
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26446..27786)
DNA (1341bp) protein (447aa)
Prophage LambdaMc01, DNA methyltransferase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXR4_9BRAD rbh
Prophage LambdaMc01, DNA methyltransferase {ECO:0000313|EMBL:EAQ35223.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
prophage LambdaMc01, DNA methyltransferase rbh
Displaying items 1-30 of 56 in total

View Taxonomy