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SCNpilot_cont_500_bf_scaffold_10658

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_10658_trna_1
unknown

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comp(35..107)
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_10658_1
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(178..597)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WSG5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ37038.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_10658_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

690..2036
DNA (1347bp) protein (449aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] rbh
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000255|HAMAP-Rule:MF_00210}; EC=2.5.1.19 {ECO:0000255|HAMAP-Rule:MF_00210};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00210}; Short=EPSP synthase {ECO:0000255|HAMAP-Rule:MF_00210};; Short=EPSPS {ECO:0000255|HAMAP-Rule:MF_00210};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=AROA_NITHX rbh
SCNpilot_cont_500_bf_scaffold_10658_3
unknown

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comp(1898..2239)
DNA (342bp) protein (114aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_10658_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2286..2600
DNA (315bp) protein (105aa)
cmk; cytidylate kinase (EC:2.7.4.14); K00945 cytidylate kinase [EC:2.7.4.14]
Cytidylate kinase {ECO:0000255|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000255|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000255|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000255|HAMAP-Rule:MF_00238}; Short=CMP kinase {ECO:0000255|HAMAP-Rule:MF_00238};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Cytidylate kinase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=KCY_NITHX
SCNpilot_cont_500_bf_scaffold_10658_5
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3065..4489)
DNA (1425bp) protein (475aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AEC2_RHIET rbh
Uncharacterized protein {ECO:0000313|EMBL:EGE57140.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_10658_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4766..4897
DNA (132bp) protein (44aa)
30S ribosomal protein S1 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRT3_NITHX
rpsA; 30S ribosomal protein S1; K02945 small subunit ribosomal protein S1
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_10658_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5081..5977)
DNA (897bp) protein (299aa)
endonuclease III; K10773 endonuclease III [EC:4.2.99.18] rbh
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Endonuclease III n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRT4_NITHX rbh
SCNpilot_cont_500_bf_scaffold_10658_8
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6000..6521
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WSF9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ37044.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_10658_9
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6541..7485
DNA (945bp) protein (315aa)
AraC family transcriptional regulator; K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] rbh
DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada / transcriptional regulator, AraC family {ECO:0000313|EMBL:ABE61061.1}; EC=2.1.1.63 {ECO:0000313|EMBL:ABE61061.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada / transcriptional regulator, AraC family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRT6_NITHX rbh
SCNpilot_cont_500_bf_scaffold_10658_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7726..8349)
DNA (624bp) protein (208aa)
phosphoglyceromutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000255|HAMAP-Rule:MF_01039}; Short=BPG-dependent PGAM {ECO:0000255|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000255|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000255|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000255|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000255|HAMAP-Rule:MF_01039};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (str
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=GPMA_NITHX
SCNpilot_cont_500_bf_scaffold_10658_11
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8552..9286)
DNA (735bp) protein (245aa)
dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000255|HAMAP-Rule:MF_00102}; Short=HTPA reductase {ECO:0000255|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000255|HAMAP-Rule:MF_00102};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
4-hydroxy-tetrahydrodipicolinate reductase n=2 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=DAPB_NITWN
SCNpilot_cont_500_bf_scaffold_10658_12
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9467..10054)
DNA (588bp) protein (196aa)
NADPH-dependent FMN reductase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WSF6_9BRAD rbh
NADPH-dependent FMN reductase {ECO:0000313|EMBL:EAQ37048.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
NADPH-dependent FMN reductase rbh
SCNpilot_cont_500_bf_scaffold_10658_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10248..10838)
DNA (591bp) protein (197aa)
Ribosomal RNA adenine methylase transferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRT9_NITHX
ribosomal RNA adenine methylase transferase
Ribosomal RNA adenine methylase transferase {ECO:0000313|EMBL:ABE61058.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_10658_14
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10944..12083)
DNA (1140bp) protein (380aa)
Chaperone protein DnaJ n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRU0_NITHX rbh
chaperone protein DnaJ; K03686 molecular chaperone DnaJ rbh
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_10658_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12239..14047)
DNA (1809bp) protein (603aa)
Chaperone protein DnaK n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=DNAK_NITHX
dnaK; molecular chaperone DnaK; K04043 molecular chaperone DnaK
Chaperone protein DnaK {ECO:0000255|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000255|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000255|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000255|HAMAP-Rule:MF_00332}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_10658_16
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14383..15321
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRU2_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61055.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_10658_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15363..15962)
DNA (600bp) protein (200aa)
Protein GrpE n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRU3_NITHX rbh
heat shock protein GrpE; K03687 molecular chaperone GrpE rbh
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_10658_18
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16057..16860)
DNA (804bp) protein (268aa)
Heat-inducible transcription repressor HrcA n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=HRCA_NITHX
hrcA; heat-inducible transcription repressor; K03705 heat-inducible transcriptional repressor
Heat-inducible transcription repressor HrcA {ECO:0000255|HAMAP-Rule:MF_00081}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_10658_19
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16860..17081)
DNA (222bp) protein (74aa)
Heat-inducible transcription repressor HrcA n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=HRCA_NITWN
hrcA; heat-inducible transcription repressor; K03705 heat-inducible transcriptional repressor
Heat-inducible transcription repressor HrcA {ECO:0000255|HAMAP-Rule:MF_00081}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_500_bf_scaffold_10658_20
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17338..17979
DNA (642bp) protein (214aa)
rph; ribonuclease PH (EC:2.7.7.56); K00989 ribonuclease PH [EC:2.7.7.56]
Ribonuclease PH {ECO:0000255|HAMAP-Rule:MF_00564}; Short=RNase PH {ECO:0000255|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000255|HAMAP-Rule:MF_00564};; tRNA nucleotidyltransferase {ECO:0000255|HAMAP-Rule:MF_00564}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Ribonuclease PH n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=RNPH_NITHX
SCNpilot_cont_500_bf_scaffold_10658_21
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18097..18732
DNA (636bp) protein (212aa)
deoxyribonucleotide triphosphate pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] rbh
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Ni
Non-canonical purine NTP pyrophosphatase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRU6_NITHX rbh
SCNpilot_cont_500_bf_scaffold_10658_22
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18719..19879
DNA (1161bp) protein (387aa)
coproporphyrinogen III oxidase; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]
Putative oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRU7_NITHX
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:ABE61050.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_10658_23
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19897..21093)
DNA (1197bp) protein (399aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRU8_NITHX rbh
extracellular ligand-binding receptor rbh
Amino acid/amide ABC transporter substrate-binding protein, HAAT family {ECO:0000313|EMBL:ABE61049.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Displaying 24 items

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