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SCNpilot_cont_500_bf_scaffold_2147

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2147_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..2328
DNA (2328bp) protein (776aa)
RNA polymerase-associated protein RapA {ECO:0000256|HAMAP-Rule:MF_01821, ECO:0000256|SAAS:SAAS00010031}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01821, ECO:0000256|SAAS:SAAS00010033};; ATP-dependent helicase HepA {ECO:0000256|HAMAP-Rule:MF_01821}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
RNA polymerase-associated protein RapA n=1 Tax=Rhodanobacter denitrificans RepID=I4WKY8_9GAMM
DNA/RNA helicase, superfamily II, SNF2 family
SCNpilot_cont_500_bf_scaffold_2147_2
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2356..3318)
DNA (963bp) protein (321aa)
Transcriptional regulator, AraC family n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I0Y6_BORPD rbh
Transcriptional regulator AraC family {ECO:0000313|EMBL:AJK50135.1}; TaxID=595500 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae PG1.;"
AraC family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_2147_3
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3479..4312
DNA (834bp) protein (278aa)
short-chain dehydrogenase n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00035D6D6D rbh
Putative short-chain dehydrogenase {ECO:0000313|EMBL:AJK50136.1}; TaxID=595500 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae PG1.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_cont_500_bf_scaffold_2147_4
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4375..5211)
DNA (837bp) protein (279aa)
S-formylglutathione hydrolase (EC:3.1.2.12); K01070 S-formylglutathione hydrolase [EC:3.1.2.12]
S-formylglutathione hydrolase n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TXV9_STEMA
S-formylglutathione hydrolase {ECO:0000313|EMBL:EMI48568.1}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
SCNpilot_cont_500_bf_scaffold_2147_5
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5312..6379)
DNA (1068bp) protein (356aa)
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
adhC; bifunctional alcohol dehydrogenase/S-(hydroxymethyl)glutathione dehydrogenase (EC:1.1.1.1 1.1.1.284); K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
Bifunctional alcohol dehydrogenase/S-(Hydroxymethyl)glutathione dehydrogenase n=4 Tax=Rhodobacter capsulatus RepID=D5AQ47_RHOCB
SCNpilot_cont_500_bf_scaffold_2147_6
Acetobacter malorum, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6426..6707)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003B7430A
regulator protein FrmR
FrmR: Negative transcriptional regulator of formaldehyde detoxification operon {ECO:0000313|EMBL:KFL92476.1}; TaxID=178901 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter malorum.;"
SCNpilot_cont_500_bf_scaffold_2147_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6855..8222)
DNA (1368bp) protein (456aa)
Amino acid transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM33_9GAMM rbh
Amino acid transporter {ECO:0000313|EMBL:EIM00525.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
gamma-aminobutyrate permease-like transporter rbh
SCNpilot_cont_500_bf_scaffold_2147_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8241..8903)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VKA1_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL87642.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2147_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9051..9863)
DNA (813bp) protein (271aa)
Cell wall-associated hydrolase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJI7_9GAMM
Cell wall-associated hydrolase {ECO:0000313|EMBL:EIL87378.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
cell wall-associated hydrolase, invasion-associated protein
SCNpilot_cont_500_bf_scaffold_2147_10
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10136..10840)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W528_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94569.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
pyridoxal phosphate enzyme, YggS family
SCNpilot_cont_500_bf_scaffold_2147_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10981..12411)
DNA (1431bp) protein (477aa)
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5K1_9GAMM rbh
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase {ECO:0000313|EMBL:EIL94742.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase rbh
SCNpilot_cont_500_bf_scaffold_2147_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12521..12985
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5J9_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_2147_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13004..13546
DNA (543bp) protein (181aa)
GCN5 family acetyltransferase n=1 Tax=Dyella ginsengisoli RepID=UPI000346C136 rbh
acetyltransferase, ribosomal protein N-acetylase rbh
Acetyltransferase, ribosomal protein N-acetylase {ECO:0000313|EMBL:AGG88261.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_2147_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13675..14361
DNA (687bp) protein (229aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Rhodanobacter denitrificans RepID=I4WL00_9GAMM rbh
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain rbh
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:AGG88257.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_2147_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14358..15791
DNA (1434bp) protein (478aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WL01_9GAMM rbh
signal transduction histidine kinase rbh
SCNpilot_cont_500_bf_scaffold_2147_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15959..17392
DNA (1434bp) protein (478aa)
Outer membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NC64_9GAMM rbh
outer membrane protein rbh
Outer membrane protein {ECO:0000313|EMBL:AGG88255.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_2147_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17392..18522
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WL03_9GAMM rbh
ABC-type transport system, involved in lipoprotein release, permease component rbh
ABC-type transport system, involved in lipoprotein release, permease component {ECO:0000313|EMBL:AGG88254.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_2147_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18528..19271
DNA (744bp) protein (248aa)
ABC transporter-like protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WL04_9GAMM rbh
ABC-type antimicrobial peptide transport system, ATPase component rbh
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:AGG88253.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_2147_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19268..20218
DNA (951bp) protein (317aa)
Hemolysin D n=1 Tax=Rhodanobacter denitrificans RepID=I4WL05_9GAMM rbh
multidrug resistance efflux pump rbh
Multidrug resistance efflux pump {ECO:0000313|EMBL:AGG88252.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_2147_20
unknown

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comp(20321..20386)
DNA (66bp) protein (22aa)

This feature has no annotations

Displaying 20 items

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