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SCNpilot_cont_500_bf_scaffold_294

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Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_294_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..563)
DNA (561bp) protein (187aa)
gapA; glyceraldehyde-3-phosphate dehydrogenase A (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1D3_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_294_2
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(664..1104)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00038233FB
NODE_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ97767.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
serine/threonine protein phosphatase
SCNpilot_cont_500_bf_scaffold_294_3
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1196..1567)
DNA (372bp) protein (124aa)
ArsR family transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEU0_9GAMM
ArsR family transcriptional regulator {ECO:0000313|EMBL:KGI78472.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
putative transcriptional regulator
SCNpilot_cont_500_bf_scaffold_294_4
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1742..3016
DNA (1275bp) protein (425aa)
NADH dehydrogenase, FAD-containing subunit (EC:1.8.5.-)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VI49_9GAMM rbh
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:KGI78473.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
SCNpilot_cont_500_bf_scaffold_294_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3063..3275
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VY57_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92148.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_294_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3299..4390
DNA (1092bp) protein (364aa)
RND family efflux transporter MFP subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4VI51_9GAMM rbh
RND family efflux transporter MFP subunit {ECO:0000313|EMBL:EIL86892.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
RND family efflux transporter, MFP subunit
SCNpilot_cont_500_bf_scaffold_294_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4387..5703
DNA (1317bp) protein (439aa)
Acriflavin resistance protein (Fragment) n=1 Tax=Rhodanobacter sp. 115 RepID=I4VV84_9GAMM
Acriflavin resistance protein {ECO:0000313|EMBL:EIL91125.1}; Flags: Fragment;; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
cation/multidrug efflux pump
SCNpilot_cont_500_bf_scaffold_294_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5700..7547
DNA (1848bp) protein (616aa)
Acriflavin resistance protein (Fragment) n=1 Tax=Rhodanobacter sp. 115 RepID=I4VV84_9GAMM
Acriflavin resistance protein {ECO:0000313|EMBL:EIL91125.1}; Flags: Fragment;; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
cation/multidrug efflux pump
SCNpilot_cont_500_bf_scaffold_294_9
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7544..8008
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002D44ED1
Peroxiredoxin {ECO:0000313|EMBL:AIF49409.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
OsmC family protein
SCNpilot_cont_500_bf_scaffold_294_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8099..8920
DNA (822bp) protein (274aa)
S1/P1 Nuclease n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGD1_9GAMM rbh
S1/P1 Nuclease {ECO:0000313|EMBL:EIL98522.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
S1/P1 Nuclease rbh
SCNpilot_cont_500_bf_scaffold_294_11
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9385..9756)
DNA (372bp) protein (124aa)
Uncharacterized protein {ECO:0000313|EMBL:EWS63123.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
SCNpilot_cont_500_bf_scaffold_294_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9825..10436
DNA (612bp) protein (204aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Pyruvate kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGD2_9GAMM
pyruvate kinase
SCNpilot_cont_500_bf_scaffold_294_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10519..10959
DNA (441bp) protein (147aa)
TonB family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGD3_9GAMM
Gram-negative bacterial tonB protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_294_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11092..12096
DNA (1005bp) protein (335aa)
fructose-1,6-bisphosphate aldolase (EC:4.1.2.13) rbh
Fructose-bisphosphate aldolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGD4_9GAMM rbh
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:EIL98525.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_cont_500_bf_scaffold_294_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12179..12772)
DNA (594bp) protein (198aa)
autotransporter n=1 Tax=Dyella ginsengisoli RepID=UPI00034550B2 rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL93279.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
opacity protein rbh
SCNpilot_cont_500_bf_scaffold_294_16
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13008..13742)
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003481FB4
Autotransporter {ECO:0000313|EMBL:AHX11991.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
OmpA-like transmembrane domain protein
SCNpilot_cont_500_bf_scaffold_294_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14379..15905
DNA (1527bp) protein (509aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
transketolase (EC:2.2.1.1)
Transketolase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WWF9_9GAMM rbh
SCNpilot_cont_500_bf_scaffold_294_18
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15972..16604)
DNA (633bp) protein (211aa)
haloacid dehalogenase n=1 Tax=Dyella japonica RepID=UPI0002DEB458 rbh
HAD family hydrolase {ECO:0000313|EMBL:AIF49400.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
putative phosphatase
SCNpilot_cont_500_bf_scaffold_294_19
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16604..17182)
DNA (579bp) protein (193aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
3-phosphoglycerate kinase (EC:2.7.2.3)
phosphoglycerate kinase, partial n=1 Tax=Dyella ginsengisoli RepID=UPI0003779B5C
SCNpilot_cont_500_bf_scaffold_294_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17170..17691)
DNA (522bp) protein (174aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
3-phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VWW1_9GAMM
SCNpilot_cont_500_bf_scaffold_294_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17824..18480
DNA (657bp) protein (219aa)
maleylacetoacetate isomerase (EC:5.2.1.2)
Maleylacetoacetate isomerase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VWW2_9GAMM rbh
Maleylacetoacetate isomerase {ECO:0000313|EMBL:EIL91703.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_cont_500_bf_scaffold_294_22
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18506..19366)
DNA (861bp) protein (287aa)
Universal stress protein UspA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTI9_9GAMM rbh
Universal stress protein UspA {ECO:0000313|EMBL:EIL90530.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
universal stress protein UspA
SCNpilot_cont_500_bf_scaffold_294_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19561..22440
DNA (2880bp) protein (960aa)
Putative monovalent cation/H+ antiporter subunit A n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTJ0_9GAMM rbh
Putative monovalent cation/H+ antiporter subunit A {ECO:0000313|EMBL:EIL90531.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
phaA; multicomponent K+:H+ antiporter subunit A; K05559 multicomponent K+:H+ antiporter subunit A
SCNpilot_cont_500_bf_scaffold_294_24
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22440..22778
DNA (339bp) protein (113aa)
Putative monovalent cation/H+ antiporter subunit C n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTJ1_9GAMM
Putative monovalent cation/H+ antiporter subunit C {ECO:0000313|EMBL:EIL90532.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
multisubunit Na+/H+ antiporter, MnhC subunit
SCNpilot_cont_500_bf_scaffold_294_25
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22775..24319
DNA (1545bp) protein (515aa)
Putative monovalent cation/H+ antiporter subunit D n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTJ2_9GAMM
Putative monovalent cation/H+ antiporter subunit D {ECO:0000313|EMBL:EIL90533.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit
SCNpilot_cont_500_bf_scaffold_294_26
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24316..24801
DNA (486bp) protein (162aa)
Putative monovalent cation/H+ antiporter subunit E n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTJ3_9GAMM
Putative monovalent cation/H+ antiporter subunit E {ECO:0000313|EMBL:EIL90534.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
multisubunit Na+/H+ antiporter, MnhE subunit
SCNpilot_cont_500_bf_scaffold_294_27
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24798..25079
DNA (282bp) protein (94aa)
Putative monovalent cation/H+ antiporter subunit F n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTJ4_9GAMM
Putative monovalent cation/H+ antiporter subunit F {ECO:0000313|EMBL:EIL90535.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
multisubunit Na+/H+ antiporter, MnhF subunit
SCNpilot_cont_500_bf_scaffold_294_28
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25076..25435
DNA (360bp) protein (120aa)
PH adaptation potassium efflux system G transmembrane protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTJ5_9GAMM
PH adaptation potassium efflux system G transmembrane protein {ECO:0000313|EMBL:EIL90536.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
multisubunit potassium/proton antiporter, PhaG subunit
SCNpilot_cont_500_bf_scaffold_294_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25457..26581)
DNA (1125bp) protein (375aa)
Twitching motility protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1E4_9GAMM rbh
Twitching motility protein {ECO:0000313|EMBL:EIL93285.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
pilus retraction protein PilT rbh
SCNpilot_cont_500_bf_scaffold_294_30
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26666..27331
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1E5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93286.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
Displaying items 1-30 of 89 in total

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