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SCNpilot_cont_500_bf_scaffold_372

Search features with annotation key words

Displaying items 1-30 of 150 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_372_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1109)
DNA (1107bp) protein (369aa)
RNA polymerase sigma factor RpoD n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXS1_9GAMM
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
RNA polymerase, sigma 70 subunit, RpoD
SCNpilot_cont_500_bf_scaffold_372_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1510..1950)
DNA (441bp) protein (147aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLN5_9GAMM
D-tyrosyl-tRNA(Tyr) deacylase
SCNpilot_cont_500_bf_scaffold_372_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2045..2938
DNA (894bp) protein (298aa)
Lauroyl/myristoyl acyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NCB1_9GAMM rbh
Lauroyl/myristoyl acyltransferase rbh
Lauroyl/myristoyl acyltransferase {ECO:0000313|EMBL:AGG87407.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_372_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2943..6785)
DNA (3843bp) protein (1281aa)
Putative cyclic beta 1-2 glucan synthetase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUT5_9GAMM rbh
Cellobiose phosphorylase {ECO:0000313|EMBL:AGG87288.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
cellobiose phosphorylase rbh
SCNpilot_cont_500_bf_scaffold_372_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6897..8222
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEN4_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL97925.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_372_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8283..9194
DNA (912bp) protein (304aa)
6-phosphogluconate dehydrogenase, decarboxylating (EC:1.1.1.44) rbh
6-phosphogluconate dehydrogenase-like protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUT7_9GAMM rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_372_7
Pseudomonas sp. AAC, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9216..10226)
DNA (1011bp) protein (337aa)
Dioxygenase n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HUQ6_PSEUO rbh
Dioxygenase {ECO:0000313|EMBL:KES21262.1}; TaxID=1502784 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. AAC.;"
2-nitropropane dioxygenase rbh
SCNpilot_cont_500_bf_scaffold_372_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10234..11505)
DNA (1272bp) protein (424aa)
metY; Cys/Met metabolism pyridoxal-phosphate-dependent enzyme (EC:2.5.1.49); K01740 O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] rbh
Cys/Met metabolism pyridoxal-phosphate-dependent enzyme n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIN2_9GAMM rbh
Cys/Met metabolism pyridoxal-phosphate-dependent enzyme {ECO:0000313|EMBL:EIL87073.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_cont_500_bf_scaffold_372_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11659..13428)
DNA (1770bp) protein (590aa)
Sodium (Na+) symporter n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUH6_9GAMM rbh
Sodium (Na+) symporter {ECO:0000313|EMBL:EIL90867.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
sodium (Na+) symporter
SCNpilot_cont_500_bf_scaffold_372_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13483..14532
DNA (1050bp) protein (350aa)
Putative esterase of the alpha-beta hydrolase superfamily protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUH5_9GAMM rbh
Putative esterase of the alpha-beta hydrolase superfamily protein {ECO:0000313|EMBL:EIL90866.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative esterase of the alpha-beta hydrolase superfamily rbh
SCNpilot_cont_500_bf_scaffold_372_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14537..14905)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WNC8_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90968.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_372_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14971..15687)
DNA (717bp) protein (239aa)
dolichol-phosphate mannosyltransferase n=1 Tax=Dyella ginsengisoli RepID=UPI00034AA288 rbh
Glycosyl transferase family protein {ECO:0000313|EMBL:EIL88720.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
glycosyl transferase rbh
SCNpilot_cont_500_bf_scaffold_372_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15896..16546)
DNA (651bp) protein (217aa)
chromosome partitioning protein ParB n=1 Tax=Dyella ginsengisoli RepID=UPI00034A3F94 rbh
ParB-like partition protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_372_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16686..17558)
DNA (873bp) protein (291aa)
Chromosome partitioning protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WC47_9GAMM
Chromosome partitioning protein {ECO:0000313|EMBL:EIL97038.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
ATPase involved in chromosome partitioning
SCNpilot_cont_500_bf_scaffold_372_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17605..18240)
DNA (636bp) protein (212aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
16S rRNA m(7)G-527 methyltransferase (EC:2.1.1.-) rbh
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNC6_9GAMM rbh
SCNpilot_cont_500_bf_scaffold_372_16
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18421..18879)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNC5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL88716.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
membrane protease subunit, stomatin/prohibitin
SCNpilot_cont_500_bf_scaffold_372_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19239..20072)
DNA (834bp) protein (278aa)
Pirin n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNC1_9GAMM rbh
Pirin {ECO:0000313|EMBL:EIL88712.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Pirin-related protein
SCNpilot_cont_500_bf_scaffold_372_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20498..21187)
DNA (690bp) protein (230aa)
YecA family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NJC8_9GAMM
yecA family protein
YecA family protein {ECO:0000313|EMBL:AGG90984.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_372_19
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21184..22107)
DNA (924bp) protein (308aa)
Exodeoxyribonuclease III (EC:3.1.11.2) rbh
exodeoxyribonuclease III n=1 Tax=Dyella ginsengisoli RepID=UPI0003492235 rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_372_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22231..22440
DNA (210bp) protein (70aa)
Cold acclimation protein B n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WC31_9GAMM
Cold acclimation protein B {ECO:0000313|EMBL:EIL90836.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cold shock protein
SCNpilot_cont_500_bf_scaffold_372_21

Not on your lists

22564..23265
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI000362EC84
Marine sediment metagenome DNA, contig: S12H4_S01772 {ECO:0000313|EMBL:GAJ02134.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_372_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23308..25293)
DNA (1986bp) protein (662aa)
Zn-dependent oligopeptidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WE52_9GAMM rbh
Zn-dependent oligopeptidase {ECO:0000313|EMBL:EIL97743.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Zn-dependent oligopeptidase
SCNpilot_cont_500_bf_scaffold_372_23
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25397..27118
DNA (1722bp) protein (574aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002EC5E42 rbh
Uncharacterized protein {ECO:0000313|EMBL:AIF46397.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
cyclic nucleotide-binding protein; K07001 NTE family protein
SCNpilot_cont_500_bf_scaffold_372_24
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27269..27799
DNA (531bp) protein (177aa)
Transferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLU6_9GAMM rbh
Transferase {ECO:0000313|EMBL:EIL88187.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase
SCNpilot_cont_500_bf_scaffold_372_25
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27806..28360)
DNA (555bp) protein (185aa)
TonB protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7Z2_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_372_26
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28479..30230)
DNA (1752bp) protein (584aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002DB387D rbh
Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase {ECO:0000313|EMBL:AIF46392.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A rbh
SCNpilot_cont_500_bf_scaffold_372_27
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30405..31232)
DNA (828bp) protein (276aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
shikimate dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUD9_9GAMM
SCNpilot_cont_500_bf_scaffold_372_28
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31358..31594
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDP0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97581.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_372_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31770..33254)
DNA (1485bp) protein (495aa)
Glutathione synthase/ribosomal protein S6 modification protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUD5_9GAMM rbh
Glutathione synthase/ribosomal protein S6 modification protein {ECO:0000313|EMBL:EIL90826.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase) rbh
SCNpilot_cont_500_bf_scaffold_372_30
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33495..33968
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002FD6A5B
GCN5 family acetyltransferase {ECO:0000313|EMBL:AIF46387.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
acetyltransferase
Displaying items 1-30 of 150 in total

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