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SCNpilot_cont_500_bf_scaffold_428

Search features with annotation key words

Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_428_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(523..1881)
DNA (1359bp) protein (453aa)
Branched-chain alpha-keto acid dehydrogenase subunit E2 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE72_9GAMM
Branched-chain alpha-keto acid dehydrogenase subunit E2 {ECO:0000313|EMBL:EIL97763.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component
SCNpilot_cont_500_bf_scaffold_428_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2057..3037)
DNA (981bp) protein (327aa)
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKB2_9GAMM rbh
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit {ECO:0000313|EMBL:EIL99903.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit
SCNpilot_cont_500_bf_scaffold_428_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3041..3655)
DNA (615bp) protein (205aa)
Pyruvate dehydrogenase E1 alpha subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKB3_9GAMM
Pyruvate dehydrogenase E1 alpha subunit {ECO:0000313|EMBL:EIL99904.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
pyruvate dehydrogenase E1 component, alpha subunit
SCNpilot_cont_500_bf_scaffold_428_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4239..5162
DNA (924bp) protein (308aa)
Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000256|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000256|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan oxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan pyrrolase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophanase {ECO:0000256|HAMAP-Rule:MF_01972}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rh
Tryptophan 2,3-dioxygenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKB4_9GAMM rbh
tryptophan 2,3-dioxygenase (vermilion) rbh
SCNpilot_cont_500_bf_scaffold_428_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5270..6769
DNA (1500bp) protein (500aa)
Amino acid/peptide transporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKB6_9GAMM rbh
Amino acid/peptide transporter {ECO:0000313|EMBL:EIL99907.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
amino acid/peptide transporter (peptide:H symporter) rbh
SCNpilot_cont_500_bf_scaffold_428_6
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6789..7628)
DNA (840bp) protein (280aa)
Uncharacterized HTH-type transcriptional regulator in mcrB 3'region n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CZT2_STEMA
Uncharacterized HTH-type transcriptional regulator in mcrB 3'region {ECO:0000313|EMBL:CCP11685.1}; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
AraC family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_428_7
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7720..8178
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8LBF1_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EED38982.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_428_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8256..8720)
DNA (465bp) protein (155aa)
MarR family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4W2D5_9GAMM
MarR family transcriptional regulator {ECO:0000313|EMBL:EIL93626.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
transcriptional regulator
SCNpilot_cont_500_bf_scaffold_428_9
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8925..10022
DNA (1098bp) protein (366aa)
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Dyella japonica RepID=UPI00030C0FE8 rbh
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:AHX15902.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
4-hydroxyphenylpyruvate dioxygenase rbh
SCNpilot_cont_500_bf_scaffold_428_10

Not on your lists

10147..10539
DNA (393bp) protein (131aa)
Excinuclease ABC C subunit domain protein n=1 Tax=mine drainage metagenome RepID=T1CVG8_9ZZZZ
Excinuclease ABC C subunit domain protein {ECO:0000313|EMBL:EQD73084.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
tRNA/rRNA methyltransferase SpoU
SCNpilot_cont_500_bf_scaffold_428_11
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10536..11837
DNA (1302bp) protein (434aa)
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334};; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
homogentisate 1,2-dioxygenase (EC:1.13.11.5)
homogentisate 1,2-dioxygenase n=1 Tax=Dyella japonica RepID=UPI0002D5A590 rbh
SCNpilot_cont_500_bf_scaffold_428_12
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12681..12956
DNA (276bp) protein (92aa)
fumarylacetoacetate hydrolase n=1 Tax=Dyella japonica RepID=UPI00030A04C1
2-keto-4-pentenoate hydratase {ECO:0000313|EMBL:AHX11959.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
SCNpilot_cont_500_bf_scaffold_428_13
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13188..13592)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034812DE
Uncharacterized protein {ECO:0000313|EMBL:AHX15894.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
globin
SCNpilot_cont_500_bf_scaffold_428_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13845..14228
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W836_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95627.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_428_15
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14247..14573)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE78_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KJV36708.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_428_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14599..15945)
DNA (1347bp) protein (449aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE79_9GAMM
SCNpilot_cont_500_bf_scaffold_428_17
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15974..16987)
DNA (1014bp) protein (338aa)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
arginase (EC:3.5.3.1)
arginase n=1 Tax=Dyella japonica RepID=UPI0002ED7915
SCNpilot_cont_500_bf_scaffold_428_18
unknown

Not on your lists

17498..19105
DNA (1608bp) protein (536aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003476732 rbh
SCNpilot_cont_500_bf_scaffold_428_19
unknown

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19150..20034
DNA (885bp) protein (295aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_428_20

Not on your lists

20136..20843
DNA (708bp) protein (236aa)
Putative uncharacterized protein n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FXY1_RHIML
Marine sediment metagenome DNA, contig: S01H1_S25173 {ECO:0000313|EMBL:GAG24792.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_cont_500_bf_scaffold_428_21
unknown

Not on your lists

comp(20903..21592)
DNA (690bp) protein (230aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00037CB368 rbh
SCNpilot_cont_500_bf_scaffold_428_22
unknown

Not on your lists

22664..23290
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003626DA5 rbh
SCNpilot_cont_500_bf_scaffold_428_23
unknown

Not on your lists

23287..23553
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00035D95A3
SCNpilot_cont_500_bf_scaffold_428_24
unknown

Not on your lists

23692..23988
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_428_25
unknown

Not on your lists

24022..24222
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_428_26
Streptomyces sp. RSD-27, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24953..25372
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00035FEA6D
Uncharacterized protein {ECO:0000313|EMBL:KIF00481.1}; TaxID=1571774 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. RSD-27.;"
SCNpilot_cont_500_bf_scaffold_428_27
unknown

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25374..25706
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00037C4D75
SCNpilot_cont_500_bf_scaffold_428_28
unknown

Not on your lists

25828..26346
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00036B60D1 rbh
SCNpilot_cont_500_bf_scaffold_428_29
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26348..26968
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000360549D rbh
cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein
Chromosome partitioning protein {ECO:0000313|EMBL:AGT09381.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_cont_500_bf_scaffold_428_30
unknown

Not on your lists

26965..27570
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003456767 rbh
Displaying items 1-30 of 77 in total

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