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SCNpilot_cont_500_bf_scaffold_475

Search features with annotation key words

Displaying items 1-30 of 187 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_475_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1054)
DNA (1053bp) protein (351aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Elongation factor 4 n=1 Tax=Rhodanobacter sp. 115 RepID=I4VM52_9GAMM
GTP-binding protein LepA
SCNpilot_cont_500_bf_scaffold_475_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1230..2726)
DNA (1497bp) protein (499aa)
Periplasmic serine protease, Do/DeqQ family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Q4_9GAMM rbh
Periplasmic serine protease, Do/DeqQ family protein {ECO:0000313|EMBL:EIL95145.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
periplasmic serine protease, Do/DeqQ family rbh
SCNpilot_cont_500_bf_scaffold_475_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2856..3536)
DNA (681bp) protein (227aa)
Negative regulator of sigma E activity n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPL4_9GAMM
Negative regulator of sigma E activity {ECO:0000313|EMBL:EIM01406.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
negative regulator of sigma E activity
SCNpilot_cont_500_bf_scaffold_475_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3533..4147)
DNA (615bp) protein (205aa)
RNA polymerase sigma factor RpoE n=1 Tax=Rhodanobacter denitrificans RepID=I4WR80_9GAMM rbh
RNA polymerase, sigma-24 subunit, RpoE rbh
RNA polymerase, sigma-24 subunit, RpoE {ECO:0000313|EMBL:AGG89348.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_475_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4320..6539)
DNA (2220bp) protein (740aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NEW5_9GAMM rbh
diguanylate cyclase (GGDEF) domain-containing protein rbh
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AGG89349.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_475_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6551..7045)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR78_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_475_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7315..9378
DNA (2064bp) protein (688aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35 4.2.1.17) rbh
Putative enoyl-CoA hydratasee n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPL0_9GAMM rbh
Putative enoyl-CoA hydratasee {ECO:0000313|EMBL:EIM01402.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_cont_500_bf_scaffold_475_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9906..10463)
DNA (558bp) protein (186aa)
Nucleoprotein/polynucleotide-associated enzyme n=1 Tax=Rhodanobacter sp. 115 RepID=I4VZP0_9GAMM
Nucleoprotein/polynucleotide-associated enzyme {ECO:0000313|EMBL:EIL92681.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_475_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10679..10891)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VZN9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92680.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_475_10
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10891..12234)
DNA (1344bp) protein (448aa)
UDP-glucose 6-dehydrogenase n=1 Tax=Dyella japonica RepID=UPI0002EB0FB7 rbh
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:AIF48362.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
nucleotide sugar dehydrogenase rbh
SCNpilot_cont_500_bf_scaffold_475_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12359..13111)
DNA (753bp) protein (251aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WR73_9GAMM rbh
FKBP-type peptidyl-prolyl cis-trans isomerase rbh
SCNpilot_cont_500_bf_scaffold_475_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13296..15065)
DNA (1770bp) protein (590aa)
Sodium/hydrogen exchanger family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR72_9GAMM rbh
Kef-type K+ transport system, predicted NAD-binding component rbh
Kef-type K+ transport system, predicted NAD-binding component {ECO:0000313|EMBL:AGG89356.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_475_trna_1
unknown

Not on your lists

15237..15303
DNA (67bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_475_trna_2
unknown

Not on your lists

15360..15433
DNA (74bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_475_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15605..16102)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR71_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89357.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_475_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16131..16946)
DNA (816bp) protein (272aa)
Putative phosphoenolpyruvate synthase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062, ECO:0000256|SAAS:SAAS00213394}; Short=PEP synthase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062};; Short=PSRP {ECO:0000256|HAMAP-Rule:MF_01062};; EC=2.7.11.33 {ECO:0000256|HAMAP-Rule:MF_01062, ECO:0000256|SAAS:SAAS00160002};; EC=2.7.4.28 {ECO:0000256|HAMAP-Rule:MF_01062, ECO:0000256|SAAS:SAAS00159999};; Pyruvate, water dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062}; TaxID=1162282 species="Bacteri
Putative phosphoenolpyruvate synthase regulatory protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WR70_9GAMM
hypothetical protein
SCNpilot_cont_500_bf_scaffold_475_15
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(16986..17786)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Cronobacter malonaticus 507 RepID=K8BY09_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KIJ70764.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
SCNpilot_cont_500_bf_scaffold_475_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17848..19542
DNA (1695bp) protein (565aa)
Phosphoenolpyruvate synthase {ECO:0000256|PIRNR:PIRNR000854}; Short=PEP synthase {ECO:0000256|PIRNR:PIRNR000854};; EC=2.7.9.2 {ECO:0000256|PIRNR:PIRNR000854};; Pyruvate, water dikinase {ECO:0000256|PIRNR:PIRNR000854}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
phosphoenolpyruvate synthase (EC:2.7.9.2)
Phosphoenolpyruvate synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6P1_9GAMM
SCNpilot_cont_500_bf_scaffold_475_17
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19553..20584)
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00035C342A rbh
araC; AraC family transcriptional regulator rbh
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_cont_500_bf_scaffold_475_18
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20677..21483
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI0003789765 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN47457.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
fatty acid hydroxylase rbh
SCNpilot_cont_500_bf_scaffold_475_19
unknown

Not on your lists

comp(21363..22145)
DNA (783bp) protein (261aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_475_trna_3
unknown

Not on your lists

21679..21758
DNA (80bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_475_20
unknown

Not on your lists

22249..22626
DNA (378bp) protein (126aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_475_21
unknown

Not on your lists

22662..23030
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_475_22
unknown

Not on your lists

23058..24014
DNA (957bp) protein (319aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_475_23
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24140..24406
DNA (267bp) protein (89aa)
Peptidase U35, phage prohead HK97 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WED1_9GAMM
Peptidase U35, phage prohead HK97 {ECO:0000313|EMBL:EIL97822.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_cont_500_bf_scaffold_475_24

Not on your lists

comp(24373..24816)
DNA (444bp) protein (148aa)
Uncharacterized protein family UPF0150 domain protein n=1 Tax=mine drainage metagenome RepID=T1D3R4_9ZZZZ
Uncharacterized protein family UPF0150 domain protein {ECO:0000313|EMBL:EQD76975.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_475_25
Pandoraea sp. RB-44, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24835..25011)
DNA (177bp) protein (59aa)
Toxin HicA n=2 Tax=Pandoraea RepID=V5UIG8_9BURK
hypothetical protein
Toxin HicA {ECO:0000313|EMBL:AHB77578.1}; TaxID=1380774 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. RB-44.;"
SCNpilot_cont_500_bf_scaffold_475_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25251..25952
DNA (702bp) protein (234aa)
Protein phosphatase n=1 Tax=Rhodanobacter denitrificans RepID=I4WR68_9GAMM
serine/threonine protein phosphatase
Serine/threonine protein phosphatase {ECO:0000313|EMBL:AGG89360.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_475_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25944..26684)
DNA (741bp) protein (247aa)
DNA polymerase III, epsilon subunit (EC:2.7.7.7)
DNA polymerase III subunit epsilon n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPK0_9GAMM rbh
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:EIM01392.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Displaying items 1-30 of 187 in total

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