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SCNpilot_cont_500_bf_scaffold_597

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_597_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1898
DNA (1896bp) protein (632aa)
Transketolase domain-containing protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VRH6_9GAMM
Transketolase domain-containing protein {ECO:0000313|EMBL:EIL89817.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit
SCNpilot_cont_500_bf_scaffold_597_2
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1902..2444)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Achromobacter piechaudii HLE RepID=J4YMR3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJO30491.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
FIG027190: Putative transmembrane protein
SCNpilot_cont_500_bf_scaffold_597_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2560..4512
DNA (1953bp) protein (651aa)
peptidase M61 n=1 Tax=Dyella ginsengisoli RepID=UPI0003478FE3 rbh
glycyl aminopeptidase rbh
Glycyl aminopeptidase {ECO:0000313|EMBL:AGG89604.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_597_4
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4586..4828)
DNA (243bp) protein (81aa)
Transcriptional regulator, XRE family n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GR05_SPHAL
XRE family transcriptional regulator {ECO:0000313|EMBL:KGI78410.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
XRE family transcriptional regulator; K07729 putative transcriptional regulator
SCNpilot_cont_500_bf_scaffold_597_5
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4818..5246)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Rheinheimera perlucida RepID=UPI000371FC3C
Uncharacterized protein {ECO:0000313|EMBL:KGI78090.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_597_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5457..5981)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W576_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94617.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_597_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6135..6497
DNA (363bp) protein (121aa)
Transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4C5_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:EIL94316.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_597_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6508..6837)
DNA (330bp) protein (110aa)
ArsR family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4W564_9GAMM
ArsR family transcriptional regulator {ECO:0000313|EMBL:EIL94605.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
arsenical resistance operon repressor
SCNpilot_cont_500_bf_scaffold_597_9
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6845..7312)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Pseudomonas fluorescens RepID=I3RXS4_PSEFL
Vanillate O-demethylase oxidoreductase VanB {ECO:0000313|EMBL:EYR67238.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
Aha1 domain superfamily
SCNpilot_cont_500_bf_scaffold_597_10
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7639..8856
DNA (1218bp) protein (406aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003652C9D
tcaB; Bcr/CflA family drug resistance transporter; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
SCNpilot_cont_500_bf_scaffold_597_11
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8943..9893
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003492E92 rbh
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGI77725.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
ABC transporter-like protein; K09687 antibiotic transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_597_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9890..10651
DNA (762bp) protein (254aa)
sugar ABC transporter permease n=1 Tax=Dyella ginsengisoli RepID=UPI0003451893 rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_597_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10730..11581
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWU6_9GAMM
Protein of unknown function (DUF3014)
Uncharacterized protein {ECO:0000313|EMBL:AGG89552.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_597_14
unknown

Not on your lists

comp(11600..11800)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_597_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12023..12601
DNA (579bp) protein (193aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
2'-5' RNA ligase n=1 Tax=Rhodanobacter denitrificans RepID=M4NF94_9GAMM
2'-5' RNA ligase
SCNpilot_cont_500_bf_scaffold_597_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12685..13455
DNA (771bp) protein (257aa)
Putative methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD67_9GAMM rbh
Putative methyltransferase {ECO:0000313|EMBL:EIL97408.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative methyltransferase rbh
SCNpilot_cont_500_bf_scaffold_597_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13676..15235
DNA (1560bp) protein (520aa)
UPF0061 protein UU5_04194 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WF81_9GAMM
UPF0061 protein UU5_04194 {ECO:0000256|HAMAP-Rule:MF_00692}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_597_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15249..18839)
DNA (3591bp) protein (1197aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
transcription-repair coupling factor Mfd; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] rbh
Transcription-repair-coupling factor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W615_9GAMM rbh
SCNpilot_cont_500_bf_scaffold_597_19
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19064..19666)
DNA (603bp) protein (201aa)
Sortase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VN31_9GAMM
Sortase {ECO:0000313|EMBL:EIL88622.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
sortase-like acyltransferase
SCNpilot_cont_500_bf_scaffold_597_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19767..20309)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQE8_9GAMM
putative methyltransferase, YaeB/AF_0241 family
Putative methyltransferase, YaeB/AF_0241 family {ECO:0000313|EMBL:AGG87633.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_597_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20393..20902)
DNA (510bp) protein (170aa)
Starvation-inducible outer membrane lipoprotein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VVL6_9GAMM
Starvation-inducible outer membrane lipoprotein {ECO:0000313|EMBL:EIL91257.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
starvation-inducible outer membrane lipoprotein
SCNpilot_cont_500_bf_scaffold_597_22
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20937..21920)
DNA (984bp) protein (328aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000366B517 rbh
protein involved in catabolism of external DNA
SCNpilot_cont_500_bf_scaffold_597_23
unknown

Not on your lists

21973..22326
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_597_24
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22562..24238
DNA (1677bp) protein (559aa)
copper oxidase n=1 Tax=Dyella ginsengisoli RepID=UPI0003458AA3
Copper resistance protein CopA {ECO:0000313|EMBL:KGI77872.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
copper-resistance protein, CopA family
SCNpilot_cont_500_bf_scaffold_597_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24235..25374
DNA (1140bp) protein (380aa)
Copper resistance B n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMA6_9GAMM
Copper resistance B {ECO:0000313|EMBL:EIM00598.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
uncharacterized protein involved in copper resistance
SCNpilot_cont_500_bf_scaffold_597_26
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25384..26001
DNA (618bp) protein (206aa)
Cytochrome c family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WGI5_9GAMM
Cytochrome c family protein {ECO:0000313|EMBL:EIL98576.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ketosteroid isomerase-like enzyme
SCNpilot_cont_500_bf_scaffold_597_27
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25995..26636)
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003460E32
NAD-dependent dehydratase {ECO:0000313|EMBL:AHX14034.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
NAD-dependent epimerase/dehydratase; K07118
SCNpilot_cont_500_bf_scaffold_597_28
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26748..27647
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003479466 rbh
Transcriptional regulator {ECO:0000313|EMBL:AIF48705.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ptxR; transcriptional regulator PtxR
SCNpilot_cont_500_bf_scaffold_597_29
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27667..28596)
DNA (930bp) protein (310aa)
Integral membrane protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMC3_9GAMM
Integral membrane protein {ECO:0000313|EMBL:EIM00615.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative permease, DMT superfamily
SCNpilot_cont_500_bf_scaffold_597_30
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28656..30791)
DNA (2136bp) protein (712aa)
Uncharacterized protein (Fragment) n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7J4_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL95435.1}; Flags: Fragment;; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
uncharacterized protein involved in outer membrane biogenesis
Displaying items 1-30 of 43 in total

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