ggKbase home page

SCNpilot_cont_500_bf_scaffold_785

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_785_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(299..1378)
DNA (1080bp) protein (360aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B8F4A
P pilus assembly protein, pilin FimA
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_785_2
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1418..4072)
DNA (2655bp) protein (885aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F5577E
Uncharacterized protein {ECO:0000313|EMBL:AIF45893.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
fimbrial biogenesis outer membrane usher protein
SCNpilot_cont_500_bf_scaffold_785_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4087..4824)
DNA (738bp) protein (246aa)
P pilus assembly protein, chaperone PapD n=1 Tax=Rhodanobacter sp. 115 RepID=I4VL01_9GAMM
P pilus assembly protein, chaperone PapD {ECO:0000313|EMBL:EIL87892.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
P pilus assembly protein, chaperone PapD; K15540 chaperone protein EcpD
SCNpilot_cont_500_bf_scaffold_785_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4896..5480)
DNA (585bp) protein (195aa)
Major type 1 subunit fimbrin (Pilin) n=1 Tax=Rhodanobacter sp. 115 RepID=I4VL02_9GAMM
Major type 1 subunit fimbrin (Pilin) {ECO:0000313|EMBL:EIL87893.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
fimbrial protein
SCNpilot_cont_500_bf_scaffold_785_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6059..6670
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VL04_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87895.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_785_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6667..7134
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2X7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93818.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_cont_500_bf_scaffold_785_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7131..7325
DNA (195bp) protein (65aa)
XRE family transcriptional regulator n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ64_9GAMM
putative transcriptional regulator
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_785_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7342..8928
DNA (1587bp) protein (529aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Rhodanobacter denitrificans RepID=M4NDH8_9GAMM rbh
putative hydrolase or acyltransferase of alpha/beta superfamily rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_785_9
unknown

Not on your lists

8925..9098
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_785_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9095..9829
DNA (735bp) protein (245aa)
Sodium ABC transporter ATP-binding protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2X4_9GAMM rbh
ABC-type Na+ transport system, ATPase component rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_785_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9826..11031
DNA (1206bp) protein (402aa)
Na+ efflux pump ABC transporter permease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2X3_9GAMM rbh
Na+ efflux pump ABC transporter permease {ECO:0000313|EMBL:EIL93814.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ABC-type Na+ efflux pump, permease component rbh
SCNpilot_cont_500_bf_scaffold_785_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11053..11904)
DNA (852bp) protein (284aa)
Hydrolase of the alpha-beta fold superfamily protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VL11_9GAMM rbh
Hydrolase of the alpha-beta fold superfamily protein {ECO:0000313|EMBL:EIL87902.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative hydrolase or acyltransferase of alpha/beta superfamily
SCNpilot_cont_500_bf_scaffold_785_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12007..13101)
DNA (1095bp) protein (365aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ferrochelatase (EC:4.99.1.1)
Ferrochelatase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ21_9GAMM
SCNpilot_cont_500_bf_scaffold_785_14
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13128..13817
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ20_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL89311.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_785_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13887..14144
DNA (258bp) protein (86aa)
Sec-independent protein translocase protein TatA n=1 Tax=Rhodanobacter sp. 115 RepID=I4VL14_9GAMM
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
twin arginine-targeting protein translocase, TatA/E family
SCNpilot_cont_500_bf_scaffold_785_16
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14175..14594
DNA (420bp) protein (140aa)
Sec-independent protein translocase protein TatB n=1 Tax=Rhodanobacter sp. 115 RepID=I4VL15_9GAMM
Sec-independent protein translocase protein TatB {ECO:0000256|HAMAP-Rule:MF_00237, ECO:0000256|SAAS:SAAS00028234}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
twin arginine-targeting protein translocase TatB
SCNpilot_cont_500_bf_scaffold_785_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14581..15342
DNA (762bp) protein (254aa)
Sec-independent protein translocase protein TatC n=1 Tax=Rhodanobacter sp. 115 RepID=I4VL16_9GAMM rbh
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
twin arginine targeting protein translocase subunit TatC rbh
SCNpilot_cont_500_bf_scaffold_785_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15407..17623)
DNA (2217bp) protein (739aa)
Phosphoglycerol transferase family protein, alkaline phosphatase superfamily n=1 Tax=Rhodanobacter denitrificans RepID=M4ND94_9GAMM
Phosphoglycerol transferase family protein, alkaline phosphatase superfamily {ECO:0000313|EMBL:AGG87413.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
phosphoglycerol transferase family protein, alkaline phosphatase superfamily
SCNpilot_cont_500_bf_scaffold_785_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17703..18932)
DNA (1230bp) protein (410aa)
Multifunctional CCA protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W341_9GAMM
Multifunctional CCA protein {ECO:0000256|HAMAP-Rule:MF_01261, ECO:0000256|SAAS:SAAS00054545}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
tRNA nucleotidyltransferase/poly(A) polymerase
SCNpilot_cont_500_bf_scaffold_785_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19010..21136)
DNA (2127bp) protein (709aa)
Soluble lytic murein transglycosylase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUZ6_9GAMM rbh
Soluble lytic murein transglycosylase {ECO:0000313|EMBL:EIM03288.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
soluble lytic murein transglycosylase-like protein rbh
SCNpilot_cont_500_bf_scaffold_785_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21267..22883
DNA (1617bp) protein (539aa)
Exo-beta-1,3-glucanase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDA7_9GAMM rbh
exo-beta-1,3-glucanase rbh
Exo-beta-1,3-glucanase {ECO:0000313|EMBL:AGG87428.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_785_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22897..23580
DNA (684bp) protein (228aa)
Short chain dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Z9_9GAMM
Short chain dehydrogenase {ECO:0000313|EMBL:EIL95240.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_500_bf_scaffold_785_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23564..23956)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NAE5_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87429.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_785_24
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23953..24747)
DNA (795bp) protein (265aa)
endonuclease n=1 Tax=Dyella japonica RepID=UPI00030FF6A7
Endonuclease {ECO:0000313|EMBL:AIF46710.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
metal-dependent hydrolase
SCNpilot_cont_500_bf_scaffold_785_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24816..25484)
DNA (669bp) protein (223aa)
Thiol:disulfide interchange protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WVE4_9GAMM rbh
Thiol:disulfide interchange protein {ECO:0000256|PIRNR:PIRNR001488}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
protein-disulfide isomerase rbh
SCNpilot_cont_500_bf_scaffold_785_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25532..26413)
DNA (882bp) protein (294aa)
Protein-disulfide isomerase n=1 Tax=Rhodanobacter denitrificans RepID=M4NCD8_9GAMM rbh
protein-disulfide isomerase rbh
Protein-disulfide isomerase {ECO:0000313|EMBL:AGG87432.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_785_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26476..27270)
DNA (795bp) protein (265aa)
Cytochrome c553 n=1 Tax=Rhodanobacter denitrificans RepID=M4NDB2_9GAMM rbh
cytochrome c553 rbh
Cytochrome c553 {ECO:0000313|EMBL:AGG87433.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_785_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27407..28009
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003496A79 rbh
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cell division checkpoint GTPase YihA rbh
SCNpilot_cont_500_bf_scaffold_785_29
unknown

Not on your lists

28151..28621
DNA (471bp) protein (157aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_785_30
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28655..29146)
DNA (492bp) protein (164aa)
GAF sensor protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ45_9GAMM
GAF sensor protein {ECO:0000313|EMBL:EIL89336.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
GAF domain-containing protein
Displaying items 1-30 of 39 in total

View Taxonomy