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SCNpilot_cont_500_bf_scaffold_822

Search features with annotation key words

Displaying items 1-30 of 183 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_822_1
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(224..1600)
DNA (1377bp) protein (459aa)
Type I phosphodiesterase/nucleotide pyrophosphatase n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X061_ACISM
type I phosphodiesterase/nucleotide pyrophosphatase
Type I phosphodiesterase/nucleotide pyrophosphatase {ECO:0000313|EMBL:ADW70042.1}; Flags: Precursor;; TaxID=1198114 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9).;"
SCNpilot_cont_500_bf_scaffold_822_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1671..3206)
DNA (1536bp) protein (512aa)
Glycoside hydrolase family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WH16_9GAMM rbh
Glycoside hydrolase family protein {ECO:0000313|EMBL:EIL98757.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
O-glycosyl hydrolase rbh
SCNpilot_cont_500_bf_scaffold_822_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3261..5840)
DNA (2580bp) protein (860aa)
glycoside hydrolase family protein; K01188 beta-glucosidase [EC:3.2.1.21] rbh
Glycoside hydrolase family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4F1_9GAMM rbh
Glycoside hydrolase family protein {ECO:0000313|EMBL:EIL94342.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_cont_500_bf_scaffold_822_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6037..6984
DNA (948bp) protein (316aa)
Membrane protease subunit, stomatin/prohibitin n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJL2_9GAMM rbh
Membrane protease subunit, stomatin/prohibitin {ECO:0000313|EMBL:EIL99653.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
membrane protease subunit, stomatin/prohibitin rbh
SCNpilot_cont_500_bf_scaffold_822_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7046..7513
DNA (468bp) protein (156aa)
Membrane protein implicated in regulation of membrane protease activity n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ68_9GAMM
membrane protein implicated in regulation of membrane protease activity
Membrane protein implicated in regulation of membrane protease activity {ECO:0000313|EMBL:AGG87988.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_822_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7550..8827
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ67_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG87989.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_822_7
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9116..9436)
DNA (321bp) protein (107aa)
histidine biosynthesis protein n=1 Tax=Dyella japonica RepID=UPI0002F8BB32
Histidine biosynthesis protein {ECO:0000313|EMBL:AIF49242.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
DNA-binding protein H-NS
SCNpilot_cont_500_bf_scaffold_822_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9694..11391)
DNA (1698bp) protein (566aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Proline--tRNA ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSD8_9GAMM rbh
prolyl-tRNA synthetase, family II rbh
SCNpilot_cont_500_bf_scaffold_822_9
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11511..11939)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000313304A
Uncharacterized protein {ECO:0000313|EMBL:AIF49240.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_822_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12145..12930
DNA (786bp) protein (262aa)
phosphatidylserine synthase (EC:2.7.8.8) rbh
CDP-diacylglycerol--serine O-phosphatidyltransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZL9_9GAMM rbh
CDP-diacylglycerol--serine O-phosphatidyltransferase {ECO:0000313|EMBL:EIL92660.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_cont_500_bf_scaffold_822_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12927..13418
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NBL5_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87994.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_822_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13424..13906
DNA (483bp) protein (161aa)
Ribosomal-protein-alanine acetyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSD4_9GAMM
ribosomal-protein-alanine acetyltransferase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_822_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14215..17094)
DNA (2880bp) protein (960aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
valyl-tRNA synthetase (EC:6.1.1.9) rbh
Valine--tRNA ligase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJK2_9GAMM rbh
SCNpilot_cont_500_bf_scaffold_822_14
Simiduia agarivorans, Simiduia, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17227..17739)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Microbulbifer variabilis RepID=UPI000376AB6C
tRNA/rRNA methyltransferase SpoU
tRNA/rRNA methyltransferase SpoU {ECO:0000313|EMBL:AFU99214.1}; TaxID=1117647 species="Bacteria; Proteobacteria; Gammaproteobacteria; Simiduia.;" source="Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 /; SA1).;"
SCNpilot_cont_500_bf_scaffold_822_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17759..18571)
DNA (813bp) protein (271aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNX8_9GAMM rbh
orotidine 5''-phosphate decarboxylase, subfamily 2
SCNpilot_cont_500_bf_scaffold_822_16
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18788..21034
DNA (2247bp) protein (749aa)
Uncharacterized protein n=1 Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8JKS3_STREN rbh
protein of unknown function DUF1793 rbh
Uncharacterized protein {ECO:0000313|EMBL:AEW98431.1}; TaxID=1003195 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC; 14057 / NRRL 8057).;"
SCNpilot_cont_500_bf_scaffold_822_17
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21645..24821
DNA (3177bp) protein (1059aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003183752 rbh
TonB-dependent receptor {ECO:0000313|EMBL:AIF45980.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
TonB-dependent receptor
SCNpilot_cont_500_bf_scaffold_822_18
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25006..27414
DNA (2409bp) protein (803aa)
Alpha-1,2-mannosidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNY0_9GAMM rbh
Alpha-mannosidase {ECO:0000313|EMBL:AHX13491.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
alpha-1,2-mannosidase rbh
SCNpilot_cont_500_bf_scaffold_822_19
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27562..28419
DNA (858bp) protein (286aa)
Endonuclease-exonuclease-phosphatase family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNY1_9GAMM rbh
Endonuclease-exonuclease-phosphatase family protein {ECO:0000313|EMBL:EIL88922.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
metal-dependent hydrolase
SCNpilot_cont_500_bf_scaffold_822_20
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28667..30328)
DNA (1662bp) protein (554aa)
ABC transporter ATP-binding protein n=1 Tax=Dyella japonica RepID=UPI0002E45678 rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIF49286.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ATP-binding cassette protein, ChvD family rbh
SCNpilot_cont_500_bf_scaffold_822_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30594..31862
DNA (1269bp) protein (423aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
glycine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] rbh
serine hydroxymethyltransferase n=1 Tax=Dyella ginsengisoli RepID=UPI00034898BC rbh
SCNpilot_cont_500_bf_scaffold_822_22
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31969..32496
DNA (528bp) protein (176aa)
Transcriptional repressor NrdR n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ97_9GAMM
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
transcriptional regulator NrdR; K07738 transcriptional repressor NrdR
SCNpilot_cont_500_bf_scaffold_822_23
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32651..33661
DNA (1011bp) protein (337aa)
riboflavin biosynthesis protein RibD; K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] rbh
Riboflavin biosynthesis protein RibD n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSI0_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_822_24
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33779..35347
DNA (1569bp) protein (523aa)
Uncharacterized protein n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5Z1Z6_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKN01154.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_822_25
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35733..36374
DNA (642bp) protein (214aa)
riboflavin synthase alpha chain (EC:2.5.1.9) rbh
Riboflavin synthase subunit alpha n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJA0_9GAMM rbh
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:AHX12128.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_cont_500_bf_scaffold_822_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36487..37578
DNA (1092bp) protein (364aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:4.1.2.- 3.5.4.25) rbh
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00180}; Short=DHBP synthase {ECO:0000256|HAMAP-Rule:MF_00180};; EC=4.1.99.12 {ECO:0000256|HAMAP-Rule:MF_00180};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Dyella ginsengisoli RepID=UPI00034D7A86 rbh
SCNpilot_cont_500_bf_scaffold_822_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37971..38900
DNA (930bp) protein (310aa)
L,D-carboxypeptidase A {ECO:0000313|EMBL:EIL99538.1}; EC=3.4.17.13 {ECO:0000313|EMBL:EIL99538.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
murein tetrapeptidase LD-carboxypeptidase (EC:3.4.17.13) rbh
L,D-carboxypeptidase A n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJ97_9GAMM rbh
SCNpilot_cont_500_bf_scaffold_822_28
unknown

Not on your lists

comp(38875..39639)
DNA (765bp) protein (255aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_822_29
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39686..40306)
DNA (621bp) protein (207aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Dephospho-CoA kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WIZ8_9GAMM
dephospho-CoA kinase
SCNpilot_cont_500_bf_scaffold_822_30
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40303..41160)
DNA (858bp) protein (286aa)
Type 4 prepilin-like proteins leader peptide-processing enzyme {ECO:0000256|RuleBase:RU003794}; EC=2.1.1.- {ECO:0000256|RuleBase:RU003794};; EC=3.4.23.43 {ECO:0000256|RuleBase:RU003794};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
type 4 prepilin peptidase 1 (EC:3.4.23.43)
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Rhodanobacter sp. 115 RepID=I4WCZ4_9GAMM
Displaying items 1-30 of 183 in total

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