ggKbase home page

SCNpilot_cont_500_bf_scaffold_1298

Search features with annotation key words

Displaying 25 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1298_1
unknown

Not on your lists

comp(1..666)
DNA (666bp) protein (222aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1298_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(739..2289)
DNA (1551bp) protein (517aa)
PepSY-associated TM helix domain-containing protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5M5_9GAMM rbh
PepSY-associated TM helix domain-containing protein {ECO:0000313|EMBL:EIL94766.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
PepSY-associated TM helix domain-containing protein rbh
SCNpilot_cont_500_bf_scaffold_1298_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2303..2566)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WSJ1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02433.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1298_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2566..2868)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQ74_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM01616.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_cont_500_bf_scaffold_1298_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2901..5027)
DNA (2127bp) protein (709aa)
TonB-dependent receptor protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPU3_9GAMM rbh
TonB-dependent receptor protein {ECO:0000313|EMBL:EIL89234.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
TonB-dependent receptor protein; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_500_bf_scaffold_1298_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5327..5947)
DNA (621bp) protein (207aa)
Methionine-R-sulfoxide reductase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUA3_9GAMM
Methionine-R-sulfoxide reductase {ECO:0000313|EMBL:EIM03045.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
methionine-R-sulfoxide reductase
SCNpilot_cont_500_bf_scaffold_1298_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6193..7920)
DNA (1728bp) protein (576aa)
Redoxin domain-containing protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPU1_9GAMM rbh
Redoxin domain-containing protein {ECO:0000313|EMBL:EIL89232.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
cytochrome c biogenesis protein rbh
SCNpilot_cont_500_bf_scaffold_1298_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8058..8705
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002DE9C15
RNA polymerase, sigma subunit, ECF family
RNA polymerase, sigma subunit, ECF family {ECO:0000313|EMBL:AGG89768.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_1298_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8711..9364
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPT9_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL89230.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1298_10
unknown

Not on your lists

9447..9743
DNA (297bp) protein (99aa)
Pentapeptide MXKDX repeat-containing protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPT8_9GAMM
SCNpilot_cont_500_bf_scaffold_1298_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9846..10928
DNA (1083bp) protein (361aa)
Putative oxidoreductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5P0_9GAMM rbh
Putative oxidoreductase {ECO:0000313|EMBL:EIL94781.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
2-nitropropane dioxygenase-like enzyme rbh
SCNpilot_cont_500_bf_scaffold_1298_12
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11002..11655
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFA6_9GAMM
Guanosine polyphosphate pyrophosphohydrolase {ECO:0000313|EMBL:KGM57047.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1298_13
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11749..12135
DNA (387bp) protein (129aa)
Ribosomal silencing factor RsfS n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPT6_9GAMM
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
iojap-like ribosome-associated protein
SCNpilot_cont_500_bf_scaffold_1298_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12560..13033
DNA (474bp) protein (158aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomo
50S rRNA methyltransferase n=1 Tax=Dyella ginsengisoli RepID=UPI000348AC74
rRNA large subunit m3Psi methyltransferase RlmH
SCNpilot_cont_500_bf_scaffold_1298_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13041..13691)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI0003817F4C rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL92045.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1298_16
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13887..14336
DNA (450bp) protein (150aa)
Acetyltransferase, GNaT family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPT3_9GAMM
Acetyltransferase, GNaT family protein {ECO:0000313|EMBL:EIL89224.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
acetyltransferase
SCNpilot_cont_500_bf_scaffold_1298_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14348..14917
DNA (570bp) protein (190aa)
Maf-like protein UUA_03793 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQ88_9GAMM
Maf-like protein UUA_03793 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
MAF protein
SCNpilot_cont_500_bf_scaffold_1298_18
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14919..15731)
DNA (813bp) protein (271aa)
Putative metal-dependent membrane protease n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJE2_9GAMM
Putative metal-dependent membrane protease {ECO:0000313|EMBL:EIL87333.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative metal-dependent membrane protease
SCNpilot_cont_500_bf_scaffold_1298_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15925..16701
DNA (777bp) protein (259aa)
Putative methyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5P7_9GAMM
Putative methyltransferase {ECO:0000313|EMBL:EIL94788.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1298_20
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16812..18362
DNA (1551bp) protein (517aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003154A02 rbh
Membrane protein {ECO:0000313|EMBL:AHX12423.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
membrane protein TerC, possibly involved in tellurium resistance rbh
SCNpilot_cont_500_bf_scaffold_1298_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18378..18773)
DNA (396bp) protein (132aa)
Membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG) n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPT0_9GAMM
Membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG) {ECO:0000313|EMBL:EIL89221.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
MAPEG family
SCNpilot_cont_500_bf_scaffold_1298_22
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18870..19736
DNA (867bp) protein (289aa)
metallopeptidase n=1 Tax=Dyella japonica RepID=UPI00031AEC4E rbh
Metallopeptidase {ECO:0000313|EMBL:AIF47435.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
putative metalloprotease
SCNpilot_cont_500_bf_scaffold_1298_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19951..20337
DNA (387bp) protein (129aa)
Putative Fe-S oxidoreductase n=1 Tax=Rhodanobacter denitrificans RepID=M4NFC0_9GAMM
putative Fe-S oxidoreductase
Uncharacterized protein {ECO:0000313|EMBL:EIM01634.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_cont_500_bf_scaffold_1298_24
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20377..21174)
DNA (798bp) protein (266aa)
aromatic ring-opening dioxygenase (EC:1.-.-.-) rbh
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPS6_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL89217.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_cont_500_bf_scaffold_1298_25
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21307..23013)
DNA (1707bp) protein (569aa)
ATP-dependent RNA helicase DeaD {ECO:0000256|HAMAP-Rule:MF_00964}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00964};; Cold-shock DEAD box protein A {ECO:0000256|HAMAP-Rule:MF_00964}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
DNA/RNA helicase, superfamily II (EC:5.99.1.-) rbh
ATP-dependent RNA helicase DeaD n=2 Tax=Rhodanobacter sp. 115 RepID=I4VPS5_9GAMM rbh
Displaying 25 items

View Taxonomy