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SCNpilot_cont_500_bf_scaffold_1301

Search features with annotation key words

Displaying items 1-30 of 54 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1301_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1912)
DNA (1911bp) protein (637aa)
Methylmalonyl-CoA mutase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMN1_9GAMM
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:EIM00723.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
methylmalonyl-CoA mutase, N-terminal domain/subunit
SCNpilot_cont_500_bf_scaffold_1301_2
unknown

Not on your lists

comp(1909..3051)
DNA (1143bp) protein (381aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1301_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3177..4019
DNA (843bp) protein (281aa)
TonB family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMN0_9GAMM rbh
TonB family protein {ECO:0000313|EMBL:EIM00722.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
outer membrane transport energization protein TonB
SCNpilot_cont_500_bf_scaffold_1301_4
unknown

Not on your lists

comp(4068..4289)
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1301_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4438..5355)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4H7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94368.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
lysophospholipase
SCNpilot_cont_500_bf_scaffold_1301_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5367..5972)
DNA (606bp) protein (202aa)
Transcriptional regulator, TetR family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDP9_9GAMM
Transcriptional regulator, TetR family protein {ECO:0000313|EMBL:EIL97590.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
transcriptional regulator
SCNpilot_cont_500_bf_scaffold_1301_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6038..6871
DNA (834bp) protein (278aa)
Peptidase M48 Ste24p n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDQ0_9GAMM
Peptidase M48 Ste24p {ECO:0000313|EMBL:EIL97591.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Peptidase family M48
SCNpilot_cont_500_bf_scaffold_1301_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6980..7315
DNA (336bp) protein (112aa)
Putative signal peptide protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WBJ7_9GAMM
Putative signal peptide protein {ECO:0000313|EMBL:EIL96838.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1301_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7449..7826
DNA (378bp) protein (126aa)
Lipoprotein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WBJ6_9GAMM
Lipoprotein {ECO:0000313|EMBL:EIL96837.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
lipoprotein
SCNpilot_cont_500_bf_scaffold_1301_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7984..11475
DNA (3492bp) protein (1164aa)
RecBCD enzyme subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01486};; Exonuclease V subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; Helicase/nuclease RecBCD subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
recC; exodeoxyribonuclease V subunit gamma; K03583 exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
Exodeoxyribonuclease V subunit gamma n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VME2_9GAMM
SCNpilot_cont_500_bf_scaffold_1301_11
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11472..15119
DNA (3648bp) protein (1216aa)
RecBCD enzyme subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01485};; Exonuclease V subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; Helicase/nuclease RecBCD subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Exodeoxyribonuclease V subunit beta n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VME1_9GAMM
exodeoxyribonuclease V subunit beta
SCNpilot_cont_500_bf_scaffold_1301_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15109..17067
DNA (1959bp) protein (653aa)
RecBCD enzyme subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01487};; Exonuclease V subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; Helicase/nuclease RecBCD subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Exodeoxyribonuclease V subunit alpha n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VME0_9GAMM
recD; exodeoxyribonuclease V, alpha subunit
SCNpilot_cont_500_bf_scaffold_1301_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17480..21397)
DNA (3918bp) protein (1306aa)
Putative type 4 fimbrial biogenesis protein PilY1 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5Y8_9GAMM rbh
Putative type 4 fimbrial biogenesis protein PilY1 {ECO:0000313|EMBL:EIL94879.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Tfp pilus assembly protein, tip-associated adhesin PilY1 rbh
SCNpilot_cont_500_bf_scaffold_1301_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21469..22068)
DNA (600bp) protein (200aa)
Putative Tfp pilus assembly protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5Y7_9GAMM
Tfp pilus assembly protein PilX
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_1301_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22070..23098)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5Y6_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL94877.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
prepilin-type N-terminal cleavage/methylation domain-containing protein rbh
SCNpilot_cont_500_bf_scaffold_1301_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23095..23616)
DNA (522bp) protein (174aa)
Type IV pilus modification protein PilV n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5Y5_9GAMM
Type IV pilus modification protein PilV {ECO:0000313|EMBL:EIL94876.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
type IV pilus modification protein PilV
SCNpilot_cont_500_bf_scaffold_1301_17
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23613..24242)
DNA (630bp) protein (210aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WTR7_9GAMM
prepilin-type N-terminal cleavage/methylation domain-containing protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_1301_18
unknown

Not on your lists

comp(24548..24676)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1301_19
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24673..25176)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI0002FE6297
N-acetyltransferase GCN5
GCN5-like N-acetyltransferase {ECO:0000313|EMBL:AER55603.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCNpilot_cont_500_bf_scaffold_1301_20
Xanthomonas sp. Nyagatare, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25180..25443)
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI0002DFC568
Uncharacterized protein {ECO:0000313|EMBL:KGK58427.1}; TaxID=1552758 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sp. Nyagatare.;"
SCNpilot_cont_500_bf_scaffold_1301_trna_1
unknown

Not on your lists

comp(26085..26157)
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_1301_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26208..27167)
DNA (960bp) protein (320aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W819_9GAMM rbh
SCNpilot_cont_500_bf_scaffold_1301_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27194..27694)
DNA (501bp) protein (167aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
signal peptidase II (EC:3.4.23.36)
Lipoprotein signal peptidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W818_9GAMM
SCNpilot_cont_500_bf_scaffold_1301_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27910..30771)
DNA (2862bp) protein (954aa)
Isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Isoleucine--tRNA ligase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTR3_9GAMM
SCNpilot_cont_500_bf_scaffold_1301_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30955..31908)
DNA (954bp) protein (318aa)
FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Riboflavin kinase n=2 Tax=Rhodanobacter denitrificans RepID=M4NKV0_9GAMM
SCNpilot_cont_500_bf_scaffold_1301_25
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31932..33539)
DNA (1608bp) protein (536aa)
Integral membrane protein MviN n=1 Tax=Rhodanobacter sp. 115 RepID=I4W4L3_9GAMM rbh
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
integral membrane protein MviN rbh
SCNpilot_cont_500_bf_scaffold_1301_26
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


33744..34007
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1 Tax=Dyella RepID=UPI0002E2F7D5
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20
SCNpilot_cont_500_bf_scaffold_1301_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34630..36006)
DNA (1377bp) protein (459aa)
DNA repair protein RadA n=1 Tax=Dyella ginsengisoli RepID=UPI00034CCFC1 rbh
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA repair protein RadA rbh
SCNpilot_cont_500_bf_scaffold_1301_28
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36210..37298)
DNA (1089bp) protein (363aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
alanine racemase (EC:5.1.1.1); K01775 alanine racemase [EC:5.1.1.1] rbh
Alanine racemase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W518_9GAMM rbh
SCNpilot_cont_500_bf_scaffold_1301_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37468..38862)
DNA (1395bp) protein (465aa)
primary replicative DNA helicase (EC:3.6.1.-) rbh
Primary replicative DNA helicase {ECO:0000313|EMBL:AGG88334.1}; EC=3.6.1.- {ECO:0000313|EMBL:AGG88334.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Primary replicative DNA helicase n=1 Tax=Rhodanobacter denitrificans RepID=M4NCG5_9GAMM rbh
Displaying items 1-30 of 54 in total

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