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SCNpilot_cont_500_bf_scaffold_1399

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1399_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..173
DNA (171bp) protein (57aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
RNAse PH (EC:2.7.7.56)
Ribonuclease PH n=1 Tax=Rhodanobacter sp. 115 RepID=I4W1A8_9GAMM
SCNpilot_cont_500_bf_scaffold_1399_2
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

196..585
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Streptomyces RepID=UPI00036D9403
SC5H1.25c; hypothetical protein
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_cont_500_bf_scaffold_1399_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


582..1181
DNA (600bp) protein (200aa)
Non-canonical purine NTP pyrophosphatase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2C2_9GAMM rbh
non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_1399_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1178..2344
DNA (1167bp) protein (389aa)
HemN family oxidoreductase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W1A6_9GAMM rbh
HemN family oxidoreductase {ECO:0000313|EMBL:EIL93247.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative oxygen-independent coproporphyrinogen III oxidase
SCNpilot_cont_500_bf_scaffold_1399_5
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2361..3008)
DNA (648bp) protein (216aa)
Uncharacterized protein n=6 Tax=Burkholderia pseudomallei RepID=K7Q1Q3_BURPE
Uncharacterized protein {ECO:0000313|EMBL:AHX11859.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1399_6
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3016..3522)
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Methylotenera mobilis RepID=UPI00037D8731
Uncharacterized protein {ECO:0000313|EMBL:AHX15805.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
NosL family protein
SCNpilot_cont_500_bf_scaffold_1399_7
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3519..4349)
DNA (831bp) protein (277aa)
ABC-2 type transporter n=1 Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9YZ08_9NEIS rbh
Membrane protein {ECO:0000313|EMBL:AHX11857.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
nosY; hypothetical protein; K01992 ABC-2 type transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_1399_8
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4346..5305)
DNA (960bp) protein (320aa)
ABC transporter related n=2 Tax=Ralstonia pickettii RepID=B2UHW4_RALPJ rbh
Copper ABC transporter ATP-binding protein {ECO:0000313|EMBL:AHX15803.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
ABC transporter; K01990 ABC-2 type transport system ATP-binding protein rbh
SCNpilot_cont_500_bf_scaffold_1399_9
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5265..6521)
DNA (1257bp) protein (419aa)
Periplasmic copper-binding n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21TJ4_RHOFD rbh
Copper ABC transporter substrate-binding protein {ECO:0000313|EMBL:AHX11855.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
periplasmic copper-binding protein; K07218 nitrous oxidase accessory protein rbh
SCNpilot_cont_500_bf_scaffold_1399_10
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6518..8707)
DNA (2190bp) protein (730aa)
Regulatory protein NosR n=4 Tax=Burkholderia pseudomallei RepID=C4KMF1_BURPE rbh
FMN-binding protein {ECO:0000313|EMBL:AHX11854.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
nosR; regulatory protein NosR rbh
SCNpilot_cont_500_bf_scaffold_1399_11
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8722..9141)
DNA (420bp) protein (140aa)
Cytochrome c class I n=2 Tax=Thauera RepID=C4ZN14_THASP
Cytochrome C {ECO:0000313|EMBL:AHX11853.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
cytochrome C class I
SCNpilot_cont_500_bf_scaffold_1399_12
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9387..11315
DNA (1929bp) protein (643aa)
nitrous-oxide reductase (EC:1.7.99.6); K00376 nitrous-oxide reductase [EC:1.7.2.4] id=12493662 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
nitrous-oxide reductase (EC:1.7.99.6); K00376 nitrous-oxide reductase [EC:1.7.2.4] rbh
Nitrous-oxide reductase {ECO:0000313|EMBL:AHX15799.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_cont_500_bf_scaffold_1399_13
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11406..12521
DNA (1116bp) protein (372aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B6632D
Thiamine biosynthesis protein ApbE {ECO:0000313|EMBL:AHX15798.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
ApbE family lipoprotein; K03734 thiamine biosynthesis lipoprotein
SCNpilot_cont_500_bf_scaffold_1399_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12677..15043
DNA (2367bp) protein (789aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W1A5_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL93246.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Protein of unknown function (DUF1631)
SCNpilot_cont_500_bf_scaffold_1399_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15040..15369
DNA (330bp) protein (110aa)
Type IV pilus assembly PilZ n=1 Tax=Rhodanobacter sp. 115 RepID=I4W1A4_9GAMM
Type IV pilus assembly PilZ {ECO:0000313|EMBL:EIL93245.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
PilZ domain-containing protein
SCNpilot_cont_500_bf_scaffold_1399_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15444..16784
DNA (1341bp) protein (447aa)
Xaa-Pro dipeptidase (EC:3.4.13.9) rbh
Xaa-Pro dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279, ECO:0000256|SAAS:SAAS00016582}; Short=X-Pro dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279};; EC=3.4.13.9 {ECO:0000256|HAMAP-Rule:MF_01279, ECO:0000256|SAAS:SAAS00016582};; Imidodipeptidase {ECO:0000256|HAMAP-Rule:MF_01279}; Proline dipeptidase {ECO:0000256|HAMAP-Rule:MF_01279}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Xaa-Pro dipeptidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVZ1_9GAMM rbh
SCNpilot_cont_500_bf_scaffold_1399_17
unknown

Not on your lists

16781..17038
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1399_18
Mycobacterium farcinogenes, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17290..17670
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Mycobacterium sp. (strain JDM601) RepID=F5YVG0_MYCSD
Sulfotransferase domain protein {ECO:0000313|EMBL:CDP85660.1}; TaxID=1802 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium farcinogenes.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1399_19
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17751..18749)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FQ28_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDT00348.1}; TaxID=396596 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria IOP40-10.;"
SCNpilot_cont_500_bf_scaffold_1399_20
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18771..19067)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FQ27_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDT00347.1}; TaxID=396596 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria IOP40-10.;"
SCNpilot_cont_500_bf_scaffold_1399_21
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19092..19346)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia EPM1 RepID=M3F2E2_STEMA
Uncharacterized protein {ECO:0000313|EMBL:EDT00342.1}; TaxID=396596 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria IOP40-10.;"
SCNpilot_cont_500_bf_scaffold_1399_22
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19389..19622)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FQ22_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDT00342.1}; TaxID=396596 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria IOP40-10.;"
SCNpilot_cont_500_bf_scaffold_1399_23
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19686..19940)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FQ22_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDT00342.1}; TaxID=396596 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria IOP40-10.;"
SCNpilot_cont_500_bf_scaffold_1399_24
unknown

Not on your lists

comp(20259..20585)
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1399_25
unknown

Not on your lists

comp(20640..21101)
DNA (462bp) protein (154aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1399_26
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22000..24861
DNA (2862bp) protein (954aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X2Y0_OCHA4
Uncharacterized protein {ECO:0000313|EMBL:AHX16332.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
outer membrane autotransporter
SCNpilot_cont_500_bf_scaffold_1399_27
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24912..26636
DNA (1725bp) protein (575aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X2Y0_OCHA4
Uncharacterized protein {ECO:0000313|EMBL:AHX16332.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
outer membrane autotransporter
SCNpilot_cont_500_bf_scaffold_1399_28
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26824..27045
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVZ2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AHX15794.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1399_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27042..28601
DNA (1560bp) protein (520aa)
cytochrome bd-type quinol oxidase, subunit 1 (EC:1.10.3.-) rbh
Cytochrome bd-I oxidase subunit I n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1T6_9GAMM rbh
Cytochrome bd-I oxidase subunit I {ECO:0000313|EMBL:EIL93427.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_cont_500_bf_scaffold_1399_30
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28612..29742
DNA (1131bp) protein (377aa)
cytochrome d oxidase cyd, subunit II (EC:1.10.3.-) rbh
Cytochrome d ubiquinol oxidase subunit II n=1 Tax=Rhodanobacter denitrificans RepID=I4WVZ4_9GAMM rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying items 1-30 of 37 in total

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